NBCR SUMMER INSTITUTE: CYBERINFRASTRUCTURE AND MULTISCALE MODELING APPROACHES

NBCR 暑期学院：网络基础设施和多尺度建模方法

• 批准号: 8362792
• 负责人: Wilfred Wenfeng Li
• 金额: $ 12万
• 依托单位: UNIVERSITY OF CALIFORNIA, SAN DIEGO
• 依托单位国家: 美国
• 财政年份: 2011
• 资助国家: 美国
• 起止时间: 2011-05-01 至 2012-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8362792
• 关键词: Address; Algorithms; Area; Biomedical Computing; Biomedical Research; California; Cardiac; Collaborations; Committee Members; Communities; Computational Science; Computer Assisted; Computer Simulation; Computer software; Data Analyses; Diffusion; Doctor of Philosophy; Educational workshop; Electrophysiology (science); Electrostatics; Emerging Technologies; Environment; Funding; Future; Goals; Grant; Hearing; Institutes; Learning; Mails; Manuals; Mechanics; Modeling; Molecular; National Center for Research Resources; Outcome; Participant; Postdoctoral Fellow; Principal Investigator; Prize; Research; Research Infrastructure; Research Institute; Research Personnel; Resources; Running; Schedule; Screening procedure; Series; Source; Students; Time; Training; United States National Institutes of Health; Universities; Vision; Work; base; cost; drug discovery; experience; graduate student; indexing; innovation; instructor; interest; member; multi-scale modeling; novel; posters; programs; tool; virtual; web site; wiki

This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. Primary support for the subproject and the subproject's principal investigator may have been provided by other sources, including other NIH sources. The Total Cost listed for the subproject likely represents the estimated amount of Center infrastructure utilized by the subproject, not direct funding provided by the NCRR grant to the subproject or subproject staff. The 5th NBCR Summer Institute (SI 2010) 2  6 August 2010 The National Biomedical Computation Resource (NBCR) will hold its 5th Summer Institute (SI) the week of August 2  6 2010, in La Jolla, California, on the campuses of the University of California San Diego (UCSD) and The Scripps Research Institute (TSRI). The goal of this fifth NBCR SI is to provide significant training opportunities for members of the biomedical research community in targeted areas of computational multiscale biomedical research: computer aided drug discovery; mesoscale modeling; and computational cardiac electrophysiology and mechanics. Training will include hands-on use of key NBCR tools that are freely available to the academic community. For NBCR a positive outcome of the workshop will be the creation of new users of these tools. In particular, there will be opportunities for participants to work with their own data and analyses in extended sessions. In addition to training, students will be able to hear talks in a Computational Science Seminar Series (CS3) on new directions under the theme of Challenges in Multiscale Computational Modeling, from cutting edge research undertaken by users and collaborators of the NBCR resource. This year's workshop will have four major activities + In-depth, Hands-on Training sessions in key areas of multiscale biomedical research (see list of "tracks" below). + Plenary CS3 Talks on Challenges in Multiscale Computational Modeling + Special Topics on Emerging Technologies in Multiscale Modeling, including special mini-talks or tutorials for innovative software and algorithms for Multiscale Modeling to be available in the near future. + Poster session by participants, to allow NBCR instructors and researchers to interact with the participants and to explore new opportunities for collaboration or user needs. For further information, please send an e-mail to [e-mail], or go to the website http://si.nbcr.net for more information. Overview of SI 2010 Program, Monday  Friday, 2  6 August 2010* Tutorial Tracks (morning) + Computational Cardiac Electrophysiology and Mechanics. Tutorials on use of Continuity 6.3 by NBCR (http://www.continuity.ucsd.edu/Continuity). Chair: Prof. Andrew McCulloch, UCSD. + Molecular Electrostatics and Diffusions. Tutorials on use of Adaptive Poisson Boltzmann Solvers (APBS, http://www.poissonboltzmann.org/apbs/) and BrownDye (http://browndye.ucsd.edu/browndye/doc/manual.html). Chair: Prof. J. Andrew McCammon, UCSD. + Programming Scalable Scientific Workflows. Tutorials on Vision (https://www.nbcr.net/pub/wiki/index.php?title=MGLTools). Application of the Vision Workflow environment. Chair: Prof. Michel Sanner, TSRI. Tutorial Tracks (afternoon*) + Virtual Screening and Computer Aided Drug Discovery (CADD). Tutorials on use of AutoDock and AutoDock Tools (http://mgltools.scripps.edu/) and a cloud computing based virtual screening pipeline for CADD Pipeline. Chair: Prof. Arthur Olson, TSRI. + From Cluster to Cloud Computing. Tutorials on Opal (http://www.nbcr.net/software/opal/), Rocks (http://www.rocksclusters.org/wordpress/), along with virtualization and running inside Amazon's EC2 platform. Chair: Peter W. Arzberger, Ph.D., UCSD. + Special Topics on Emerging Technologies in Multiscale Modeling. Minitalks and/or Tutorials on emerging software and novel algorithms in multiscale modeling. Chair: Prof. Michael Holst, UCSD. CS3: Challenges in Multiscale Computational Modeling (noon-time) + Invited speakers to discuss cutting edge research and how to address Challenges in multiscale computational modeling, with an emphasis in bridging scales and on the mesoscale. Special Sessions (afternoon*) + Each morning track may schedule labs to allow the students to gain additional experience with specific tools or to work on their own problems. Posters Session + There will be a poster session offered for participants, to allow greater interaction with NBCR researchers and networking with other Summer Institute participants. The best poster prizes will be selected by the SI 2010 program committee members. * There will be afternoon sessions only on Monday  Thursday. There will be no afternoon session on Friday 6 August. Key Information on the NBCR SI Who should attend: The workshop is aimed at graduate students, postdocs and researchers interested in learning how to use specific tools covered by this summer institute or who are interested in understanding specific examples of computational approaches to multiscale biomedical research.

这个子项目是利用资源的许多研究子项目之一。 由NIH/NCRR资助的中心拨款提供。对子项目的主要支持 子项目的首席调查员可能是由其他来源提供的， 包括美国国立卫生研究院的其他来源。为子项目列出的总成本可能 表示该子项目使用的中心基础设施的估计数量， 不是由NCRR赠款提供给次级项目或次级项目工作人员的直接资金。 第五届NBCR暑期学院(SI 2010) 2 2010年8月6日 国家生物医学计算资源(NBCR)将举办第五届暑期研究所 (Si)2010年8月2日至6日，加利福尼亚州拉荷亚，校园 加州大学圣地亚哥分校(UCSD)和斯克里普斯研究所(TSRI)。 第五届NBCR SI的目标是为以下成员提供重要的培训机会 计算多尺度目标领域的生物医学研究社区 生物医学研究：计算机辅助药物发现；中尺度建模；以及 计算心脏电生理学和力学。培训将包括动手使用 学术团体可免费获得的关键NBCR工具。对于NBCR a 讲习班的积极成果将是创造这些工具的新用户。在……里面 特别是，参与者将有机会使用自己的数据和 在延长的会话中进行分析。 除了培训，学生们还将能够听到计算科学的演讲 多尺度挑战主题下的新方向系列研讨会(CS3) 计算建模，来自用户进行的前沿研究和 NBCR资源的协作者。 今年的工作坊将有四项主要活动 +多尺度生物医学研究关键领域的深入实践培训课程 (请参阅下面的“曲目”列表)。 +全体会议CS3讨论多尺度计算建模的挑战 +关于多尺度建模中的新兴技术的特别专题，包括 多尺度建模的创新软件和算法的小型讲座或教程 将在不久的将来推出。 +参与者的海报会议，让NBCR讲师和研究人员进行互动 并探索新的协作机会或用户需求。 欲了解更多信息，请发送电子邮件至[e-mail]，或访问 有关更多信息，请访问网站http://si.nbcr.net。 SI 2010计划概览，2010年8月2-6日，星期一* 教程曲目(上午) +计算性心脏电生理学和力学。有关使用的教程 由NBCR(http://www.continuity.ucsd.edu/Continuity).)提供的连续性6.3主席：安德鲁教授 加州大学圣迭戈分校麦卡洛克。 +分子静电学和扩散。关于使用自适应泊松的教程 波尔兹曼解算器(APBS、http://www.poissonboltzmann.org/apbs/)和BrownDye (http://browndye.ucsd.edu/browndye/doc/manual.html).主席：J·安德鲁教授 加州大学圣迭戈分校麦卡蒙。 +编程可扩展的科学工作流。关于视觉的教程 (https://www.nbcr.net/pub/wiki/index.php?title=MGLTools).《愿景》的应用 工作流环境。主席：TSRI米歇尔·桑纳教授。 教程曲目(下午*) +虚拟筛选和计算机辅助药物发现(CADD)。有关使用的教程 自动对接和自动对接工具(基于http://mgltools.scripps.edu/)和云计算 CADD管道的虚拟筛选管道。主席：TSRI亚瑟·奥尔森教授。 +从集群到云计算。关于Opal的教程 (http://www.nbcr.net/software/opal/)，岩石(http://www.rocksclusters.org/wordpress/)， 以及虚拟化，并在亚马逊的EC2平台内运行。主席：彼得·W。 阿兹伯格，加州大学洛杉矶分校博士。 +关于多尺度建模中新兴技术的专题。Minitalks和/或 多尺度建模中新兴软件和新算法的教程。主讲人：霍华德教授。 迈克尔·霍尔斯特，加州大学洛杉矶分校。 CS3：多尺度计算建模的挑战(中午时间) +邀请演讲者讨论前沿研究以及如何应对 多尺度计算建模，重点是桥接尺度和 中尺度。 特别会议(下午*) +每个早班课程可以安排实验，让学生获得额外的 有使用特定工具的经验或解决自己的问题。 海报会议 +将为参与者提供海报会议，以实现更大的互动 与NBCR研究人员建立联系，并与其他暑期学院参与者建立联系。这个 最佳海报奖将由SI 2010计划委员会成员选出。 *只在周一和周四下午举行会议。不会有下午 会议于8月6日星期五举行。 有关NBCR SI的主要信息 参加对象：研讨会面向研究生、博士后和 有兴趣学习如何使用今年夏天介绍的特定工具的研究人员 机构或对了解计算的具体示例感兴趣的人 多尺度生物医学研究的方法。