Dynein light chain as a dimerization hub for natively disordered proteins

动力蛋白轻链作为天然无序蛋白质的二聚化中心

• 批准号: 8547816
• 负责人: ELISAR J BARBAR
• 金额: $ 27.66万
• 依托单位: OREGON STATE UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2009
• 资助国家: 美国
• 起止时间: 2009-09-30 至 2015-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8547816
• 关键词: Affect; Apoptosis; Binding; Binding Sites; Biochemical; Biological; C-terminal; Calorimetry; Cell physiology; Cells; Circular Dichroism; Complement; Complex; Cytoskeleton; Deglutition; Development; Dimerization; Disease; Drosophila genus; Dynein ATPase; Enzymes; Fluorescence Resonance Energy Transfer; Fluorescence Spectroscopy; Foundations; Health; Homeostasis; In Vitro; Intracellular Transport; Lead; Length; Light; Link; Masks; Messenger RNA; Microtubules; Modeling; Molecular; Molecular Motors; Motor; Multiple Partners; Mutation; N-terminal; Nurses; Organism; Phenotype; Physiological Processes; Play; Property; Proteins; Proteolysis; Publishing; Regulation; Role; Solid; Solutions; Stretching; Structure; System; Techniques; Testing; Thermodynamics; Titrations; Variant; Viral Pathogenesis; WD Repeat; Work; X-Ray Crystallography; base; design; dimer; dynein light chain; in vivo; insight; interest; mutant; nephrogenesis; novel; protein complex; protein function; protein protein interaction; research study; structural biology; success

DESCRIPTION (provided by applicant): Dynein light chain LC8 is a highly conserved, essential component of the microtubule-based molecular motor dynein. Its interactions with a number of non-dynein proteins led to the widely held view that it functions as a cargo adaptor. However, structural and thermodynamics work has recently shown that LC8 cannot serve as a cargo adaptor and has led to the paradigm-shifting proposition that LC8 is not primarily a dynein subunit, but is an essential component of diverse protein complexes that play roles in a variety of cellular systems. The far-reaching and unifying hypothesis of this proposal is that LC8 is a hub protein and functions as a dimerization facilitator in dynein and in all other complexes in which it participates, promoting the dimerization and ordering of the proteins with which it interacts. Work in this proposal will elucidate binding thermodynamics and structural characterization of the two best-known proteins that interact with LC8. Aim 1 focuses on the interactions of LC8 with the intermediate chain (IC) in dynein assembly and aim 2 focuses on the interactions of LC8 with Swallow, a protein involved in localization of bicoid mRNA during Drosophila development, and the best-studied example of an LC8-interacting protein not associated with dynein. For both aims the mechanism and biological significance of LC8-promoted partner dimerization will be examined by both in vitro biophysical studies of representative protein segments and, when possible, full-length constructs, and in vivo assessment of phenotypes of cells and organisms expressing designed variants of IC and Swallow. These studies will provide a solid foundation for understanding the roles that LC8 plays in the variety of cellular systems in which it participates, and will also promote progress in the LC8 field in general as other LC8 binding partners are physiologically important. These studies also have broader applicability, because LC8 can serve as a model for other hub proteins that interact with a large number of disordered partners. In addition these studies will provide novel insights into the structural biology of dynein motor function, complementing the cell biological approaches that predominate the field of intracellular transport. Dr. Barbar's track record of pioneering work on structure-function relations of LC8, her role as developer of the novel hypothesis that LC8 is a dimerization hub for natively disordered proteins, her success in both producing useful protein constructs and handling these complex and partially disordered proteins, and her expertise in the battery of biophysical and biochemical solution techniques required to probe these questions, make her uniquely suited to lead this effort. PUBLIC HEALTH RELEVANCE: In protein-protein interaction networks, a small proportion of proteins termed "hubs" interact with many diverse partners. These studies will elucidate the mechanism of interaction of dynein light chain LC8, which we propose is a hub protein, and its role as a dimerization engine in the assembly and regulation of the microtubule-based motor complex dynein, and in assembly of non-dynein complexes that are involved in various physiological processes.

描述(申请人提供)：动力蛋白轻链LC8是基于微管的分子马达动力蛋白的一种高度保守的基本成分。它与许多非动力蛋白的相互作用导致了广泛的观点，认为它具有货物适配器的功能。然而，最近的结构和热力学研究表明，Lc8不能作为货物适配器，并导致了一种范式转换的命题，即Lc8主要不是动力蛋白亚基，而是在各种细胞系统中发挥作用的各种蛋白质复合体的重要组成部分。这一提议的深远而统一的假设是，LC8是一个中心蛋白，在动力蛋白及其参与的所有其他复合体中作为二聚化促进剂发挥作用，促进与其相互作用的蛋白质的二聚化和有序化。这项提案中的工作将阐明与LC8相互作用的两个最著名的蛋白质的结合热力学和结构特征。目的1重点研究LC8与动力蛋白组装中的中间链(IC)的相互作用，目的2侧重于LC8与燕子的相互作用，燕子是果蝇发育过程中参与双核细胞基因定位的蛋白质，也是研究最深入的与动力蛋白无关的与LC8相互作用的蛋白。对于这两个目标，将通过对具有代表性的蛋白质片段和可能的全长结构的体外生物物理研究，以及对表达IC和Slowlow设计变体的细胞和生物的体内表型的评估，来研究LC8促进的伴侣二聚的机制和生物学意义。这些研究将为了解LC8在其所参与的各种细胞系统中所扮演的角色提供坚实的基础，也将促进LC8领域的总体进展，因为其他LC8结合伙伴在生理上是重要的。这些研究也有更广泛的适用性，因为LC8可以作为与大量无序伙伴相互作用的其他中心蛋白的模型。此外，这些研究将为动力蛋白运动功能的结构生物学提供新的见解，补充主导细胞内运输领域的细胞生物学方法。Barbar博士在Lc8结构-功能关系方面的开创性工作记录，她作为新假设的开发者所扮演的角色，即Lc8是天然无序蛋白质的二聚化中心，她在产生有用的蛋白质结构和处理这些复杂和部分无序蛋白质方面的成功，以及她在探索这些问题所需的生物物理和生化解决方案技术方面的专业知识，使她成为领导这项工作的唯一合适人选。公共卫生相关性：在蛋白质-蛋白质相互作用网络中，一小部分被称为“中心”的蛋白质与许多不同的伙伴相互作用。这些研究将阐明动力蛋白轻链Lc8的相互作用机制，以及它在基于微管的运动复合体Dynein的组装和调节以及参与各种生理过程的非Dynein复合体的组装中作为二聚化引擎的作用。

项目成果

A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation

• DOI: 10.1083/jcb.201408111
• 发表时间: 2014-11-24
• 期刊: JOURNAL OF CELL BIOLOGY
• 影响因子: 7.8
• 作者: Bassler, Jochen;Paternoga, Helge;Hurt, Ed
• 通讯作者: Hurt, Ed

NMR Characterization of Self-Association Domains Promoted by Interactions with LC8 Hub Protein.

• DOI: 10.5936/csbj.201402003
• 发表时间: 2014
• 期刊: Computational and structural biotechnology journal
• 影响因子: 6
• 作者: Barbar E;Nyarko A
• 通讯作者: Nyarko A

Multivalent IDP assemblies: Unique properties of LC8-associated, IDP duplex scaffolds.

• DOI: 10.1016/j.febslet.2015.07.032
• 发表时间: 2015-09-14
• 期刊: FEBS letters
• 影响因子: 3.5
• 作者: Clark SA;Jespersen N;Woodward C;Barbar E
• 通讯作者: Barbar E

Conformational dynamics promote binding diversity of dynein light chain LC8.

构象动力学促进动力蛋白轻链 LC8 的结合多样性。

• DOI: 10.1016/j.bpc.2011.05.001
• 发表时间: 2011
• 期刊: Biophysical chemistry
• 影响因子: 3.8
• 作者: Nyarko,Afua;Hall,Justin;Hall,Andrea;Hare,Michael;Kremerskothen,Joachim;Barbar,Elisar
• 通讯作者: Barbar,Elisar

The Anchored Flexibility Model in LC8 Motif Recognition: Insights from the Chica Complex.

• DOI: 10.1021/acs.biochem.5b01099
• 发表时间: 2016-01-12
• 期刊: Biochemistry
• 影响因子: 2.9
• 作者: Clark S;Nyarko A;Löhr F;Karplus PA;Barbar E
• 通讯作者: Barbar E