Multivariate functional analysis of the genetic basis of cancer

描述（由申请人提供）：拟议研究的目标是开发多元统计方法，用于使用现有GWA数据联合分析功能相关的生物信息和相互作用。具体而言，我们建议开发联合分析一个SNP集（例如一个基因）中的多个SNP的方法，以及联合分析具有潜在可忽略和不可忽略缺失数据的多变量二级表型的方法。我们进一步建议开发全基因组基因相互作用分析方法，其中基因间SNP-SNP相关性组将被一起分析以检测相互作用。此外，我们建议在我们的全基因组关联或相互作用分析中整合先验知识；利用先验知识对预测集进行分组，并设计灵活的正则化回归方法来约束参数估计，提高预测效率。拟议的研究是由GWA研究的机会和需求驱动的，我们提出的大部分工作可以通过公开获取的不同癌症的GWA数据来经济有效地实施，以提高我们对癌症遗传基础和疾病病因的理解。

DESCRIPTION (provided by applicant): The objective of the proposed research is to develop multivariate statistical methods for joint analyses of functionally related biological information n association and interaction using existing GWA data. Specifically, we propose to develop methods for joint analyzing multiple SNPs in a SNP set (e.g. a gene), and methods for jointly analyzing multivariate secondary phenotypes with potential ignorable and non-ignorable missing data. We further propose to develop methods for genome-wide gene-gene interaction analysis, in which groups of between- gene SNP-SNP correlations will be analyzed together to detect interactions. In addition, we propose to integrate a priori knowledge in our genome-wide association or interaction analyses; and we group sets of predictors by a priori knowledge and design flexible regularized regression approaches to constrain the parameter estimation and achieve efficiency. The proposed research is motivated by opportunities and needs in GWA studies, and much of our proposed work can be cost-efficiently implemented with publicly accessible GWA data for different cancers to improve our understanding of the genetic basis and disease etiology of cancer.