Genome-based diagnostics for monitoring and evaluation of insecticide resistance in Anopheles gambiae

基于基因组的诊断用于监测和评估冈比亚按蚊杀虫剂抗药性

• 批准号: 9221234
• 负责人: Martin James Donnelly
• 金额: $ 48.66万
• 依托单位: TMLIVERPOOL SCHOOL OF TROPICAL MEDICINE
• 依托单位国家: 美国
• 财政年份: 2016
• 资助国家: 美国
• 起止时间: 2016-02-15 至 2021-01-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9221234
• 关键词: Address; Affect; Africa; Africa South of the Sahara; Anopheles Genus; Anopheles gambiae; Area; Bioinformatics; Biological Assay; Cessation of life; Chemicals; Collection; Communities; Complex; Computer Simulation; Computers; Country; Culicidae; DNA; DNA Markers; Data; Data Set; Databases; Development; Diagnostic; Diagnostic tests; Economic Development; Evaluation; Frequencies; Future; Generations; Genetic; Genome; Genomics; Geography; Goals; Insecticide Resistance; Insecticides; Institutes; Intervention; Knowledge; Laboratories; Link; Malaria; Maps; Measures; Methodology; Methods; Modeling; Monitor; Morbidity - disease rate; Mosquito Control; Nucleic Acid Regulatory Sequences; Phase; Phenotype; Play; Population; Predictive Value; Property; Regulator Genes; Research; Research Personnel; Research Project Grants; Residual state; Resistance; Resources; Role; Sampling; Specimen; Trust; Uncertainty; Variant; Work; base; biomarker panel; design; diagnostic biomarker; experimental study; genome sequencing; malaria infection; molecular marker; mortality; novel; novel marker; operation; prevent; programs; public health relevance; resistance mechanism; scale up; screening; secondary outcome; success; tool; user-friendly; vector; vector control; whole genome

 DESCRIPTION (provided by applicant): Malaria is a major cause of mortality and morbidity in Sub-Saharan Africa (SSA) and one of the biggest impediments to the economic development of the region. Malaria is transmitted by Anopheles mosquitoes and one of the major methods for controlling these mosquitoes is through the use of chemical insecticides. Unfortunately, there are only four chemical classes of insecticides licensed for used for mosquito control, and resistance has already emerged to all classes although with a marked difference in levels. This resistance is a major threat to the recent advances the malaria control community has made in reducing both deaths and malaria infections. To reduce the impact of resistance, malaria control program managers need to know when resistance is emerging in their intervention areas and put in place measures to prevent its spread e.g. switching to a new insecticide. The most effective way of doing this is through the use of DNA markers which can detect the presence of a resistance associated marker in a mosquito population before it reaches high frequency. It is the primary goal of this proposal to revolutionize the application of molecular markers for insecticide resistance across the malaria endemic countries of SSA by providing control programs with new markers and geographically-calibrated maps that predict their impact on resistance phenotypes. The unifying theme of this project is to exploit the power of whole genome sequencing to identify genes/regulatory regions that are associated with insecticide resistance. We will use a combination of approaches including computer-based searches of existing genome data bases; large scale collections and resistance screening of malaria mosquitoes in both East and West Africa, and laboratory crossing experiments to identify rare, resistance-associated variants. All these studies will be underpinned by extensive whole genome sequencing performed by the Wellcome Trust Sanger Institute. A major secondary outcome of this project will be the release of these genome data sets to the research community which will be a powerful resource for vector biologists. Once we have identified resistance-associated DNA markers we will calibrate their links with resistance and then map their frequencies and distributions in expanded collections of mosquitoes provided by a network of collaborators in SSA. We will use modelling approaches to produce marker maps from these data, including the sensitivity of their predictive power to key environmental variables. Our project will develop and apply new bioinformatic, laboratory and field methodologies to identify DNA markers and associated mapping resources for current and future insecticides, providing long-term insecticide resistance management tools for control programs.

 描述（由申请人提供）：疟疾是撒哈拉以南非洲（SSA）死亡和发病的主要原因，也是该地区经济发展的最大障碍之一。疟疾是由按蚊传播的，控制这些蚊子的主要方法之一是使用化学杀虫剂。不幸的是，只有四种化学杀虫剂获准用于控制蚊子，所有类别的抗药性已经出现，尽管水平有明显差异。这种耐药性是疟疾控制界最近在减少死亡和疟疾感染方面取得的进展的主要威胁。为了减少耐药性的影响，疟疾控制项目管理人员需要知道他们的干预地区何时出现耐药性，并采取措施防止其传播，例如改用新的杀虫剂。最有效的方法是通过使用DNA标记，该标记可以在蚊子种群中的抗性相关标记达到高频率之前检测到其存在。该提案的主要目标是通过提供具有新标记物和地理校准地图的控制计划来彻底改变SSA疟疾流行国家杀虫剂抗性分子标记物的应用，这些地图预测其对抗性表型的影响。该项目的统一主题是利用全基因组测序的力量来识别与杀虫剂抗性相关的基因/调控区域。我们将使用多种方法的组合，包括基于计算机的搜索现有的基因组数据库;在东非和西非大规模收集和抗性筛选疟疾蚊子，以及实验室交叉实验，以确定罕见的，与抗性相关的变体。所有这些研究都将得到惠康信托桑格研究所进行的广泛的全基因组测序的支持。该项目的一个主要次要成果将是向研究界发布这些基因组数据集，这将是病媒生物学家的一个强大资源。一旦我们确定了与耐药性相关的DNA标记，我们将校准它们与耐药性的联系，然后绘制它们在SSA合作者网络提供的扩大蚊子集合中的频率和分布。我们将使用建模方法从这些数据中生成标记图，包括其预测能力对关键环境变量的敏感性。我们的项目将开发和应用新的生物信息学，实验室和现场方法，以确定当前和未来杀虫剂的DNA标记和相关的绘图资源，为控制计划提供长期的杀虫剂抗性管理工具。