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Discovering the basis of the essential function of DNMT1 in wasp embryogenesis

发现 DNMT1 在黄蜂胚胎发生中的基本功能基础

基本信息

批准号：
9267998
负责人：
Jeremy Lynch
金额：
$ 7.84万
依托单位：
UNIVERSITY OF ILLINOIS AT CHICAGO
依托单位国家：
美国
项目类别：
财政年份：
2016
资助国家：
美国
起止时间：
2016-05-01 至 2019-04-30
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/9267998
关键词：
Address Affect Animals Basic Science Biological Biological Models Blastoderm Caenorhabditis elegans Catalytic Domain Cell Lineage Complement Complex Cytosine DNA Methylation DNA Modification Methylases Defect Development Disease Double-Stranded RNA Drosophila genus Embryo Embryonic Development Enzymes Epigenetic Process Eukaryota Failure Gene Expression Gene Expression Regulation Generations Genes Genetic Genetic Transcription Genome Genomic DNA Health Human Injectable Invertebrates Knowledge Maintenance Malignant Neoplasms Medical Messenger RNA Methylation Methyltransferase Modeling Modification Organism Pattern Play Process RNA Interference Regulation Repression Research Role Sampling Site System Time Tissue Differentiation Tissues Transfer RNA Ursidae Family Vertebrates Wasps Work base bisulfite bisulfite sequencing cell behavior fly gastrulation human disease insight knock-down mRNA Expression methylation pattern paralogous gene prevent public health relevance tool transcriptome transcriptome sequencing whole genome

项目摘要

DESCRIPTION (provided by applicant): DNA methylation plays a crucial role in regulating genome function in a wide variety of biological contexts in humans and other eukaryotes. In humans, aberrations of methylation are implicated in many diseases, including cancers. Surprisingly, most of the cellular machinery required for methylation has been lost in the main invertebrate model systems, the worm C. elegans and the fly Drosophila. Thus, the powerful genetic tools available in those systems have not been brought to bear on the questions of the fundamental roles for DNA methylation in development and disease. The wasp Nasonia has many of the advantages of the invertebrate model systems (e.g., small, sequenced and annotated genome, fast development, powerful genetic tools). It possesses the full complement of eukaryotic DNA methyltransferases (DNMT1, 2, and 3), and the genome has significant levels of methylation at typical CpG sites. There are three DNMT1 paralogs (a, b, and c) in Nasonia. When DNMT1a is knocked down by RNAi, embryonic lethality results. This project aims to answer four questions about the roles of DNA methylation and DNMT1a. 1) Is DNA methylation dynamic in early wasp embryogenesis? 2) Do the patterns of methylation in the early embryo depend on DNMT1a function? 3) How does the loss of DNMT1a affect the expression of genes during early embryogenesis? 4) Are the genes whose methylation state is dependent on DNMT1a correlated with those whose mRNA expression levels change after DNMT1a RNAi? Questions 1 and 2 will be addressed with Whole Genome Bisulfite Sequence, and Question 3 will use an RNA-sequencing approach, and Question 4 will use a computational approach. Medical Relevance: The Nasonia embryo provides a simple, accessible and powerful model system to gain basic insights into the functions of DNMT1 enzymes and DNA methylation, topics that are of great relevance to human health. Of the main types of methylation found in eukaryotes, Nasonia appears to employ almost exclusively gene body methylation, which is increasingly recognized as a major aspect of the disease relevance of DNA methylation. Thus Nasonia presents a special opportunity to study the importance of gene body methylation in isolation from potential confounding effects of other modes of DNA methylation.

描述（由申请人提供）：DNA甲基化在人类和其他真核生物的多种生物学背景下调节基因组功能中起着至关重要的作用。在人类中，甲基化的畸变与许多疾病有关，包括癌症。令人惊讶的是，在主要的无脊椎动物模型系统中，蠕虫C。线虫和果蝇。因此，在这些系统中可用的强大的遗传工具还没有被用于解决DNA甲基化在发育和疾病中的基本作用的问题。黄蜂Nasonia具有无脊椎动物模型系统的许多优点（例如，小，测序和注释的基因组，快速开发，强大的遗传工具）。它具有真核DNA甲基转移酶（DNMT 1，2和3）的完整补体，并且基因组在典型的CpG位点具有显著水平的甲基化。在Nasonia中存在三种DNMT 1旁系同源物（a、B和c）。当DNMT1a被RNAi敲低时，胚胎死亡。该项目旨在回答有关DNA甲基化和DNMT1a作用的四个问题。1)DNA甲基化在早期黄蜂胚胎发生中是动态的吗？2)早期胚胎的甲基化模式取决于DNMT1a功能吗？3)DNMT1a的缺失如何影响早期胚胎发生过程中的基因表达？4)甲基化状态依赖于DNMT1a的基因是否与DNMT1a RNAi后mRNA表达水平改变的基因相关？问题1和2将使用全基因组亚硫酸氢盐序列解决，问题3将使用RNA测序方法，问题4将使用计算方法。医学相关性：Nasonia胚胎提供了一个简单，可访问和强大的模型系统，以获得对DNMT1酶和DNA甲基化功能的基本见解，这些主题与人类健康密切相关。在真核生物中发现的主要甲基化类型中，Nasonia似乎几乎完全采用基因体甲基化，这越来越被认为是DNA甲基化与疾病相关性的主要方面。因此，Nasonia提供了一个特殊的机会来研究基因体甲基化的重要性，以避免其他DNA甲基化模式的潜在混淆效应。