Functional nanoscopy of membrane deformations and fission by dynamin superfamily members

动力超家族成员膜变形和裂变的功能纳米观察

• 批准号: 9982344
• 负责人: Vadim A Frolov
• 金额: $ 47.81万
• 依托单位: UNIVERSITY OF CALIF-LAWRNC LVRMR NAT LAB
• 依托单位国家: 美国
• 财政年份: 2017
• 资助国家: 美国
• 起止时间: 2017-09-26 至 2022-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9982344
• 关键词: Affect; Atomic Force Microscopy; Biological; Cells; Centronuclear myopathy; Characteristics; Chemicals; Chimera organism; Complex; Coupled; Coupling; Crowding; Dependence; Diagnostic; Dimensions; Disease; Dominant-Negative Mutation; Dynamin; Dynamin 2; Dynamin I; Elements; Environment; Epilepsy; Evolution; Extravasation; Genes; Geometry; Guanosine Triphosphate; Guanosine Triphosphate Phosphohydrolases; Human; Human Pathology; Hydrolysis; Impairment; In Vitro; Individual; Kinetics; Knowledge; Length; Life; Link; Lipids; Maintenance; Measurement; Measures; Mechanics; Mediating; Membrane; Modernization; Molecular; Mutation; Nanoscopy; Nanotechnology; Neck; Organelles; Osmotic Pressure; Outcome; Pathologic; Pathology; Pathway interactions; Phenotype; Physiological; Point Mutation; Problem Solving; Process; Property; Protein Analysis; Protein Engineering; Protein Isoforms; Proteins; Regulation; Signal Transduction; Speed; Stochastic Processes; Stress; Surface; System; Tertiary Protein Structure; Testing; Therapeutic; Time; Tissues; Tube; Variant; base; biophysical techniques; constriction; dimer; in vivo; insight; member; membrane activity; membrane model; mutant; nano; nanomechanics; nanoscale; nervous system disorder; next generation; novel; novel therapeutic intervention; protein complex; prototype; public health relevance; reconstitution; self assembly; single molecule; submicron; tool

PROJECT SUMMARY Membrane fission is associated with the breakage of a tiny nanometer-scale membrane neck connecting two separating/dividing membrane compartments at the late stages of division. Severing this neck in a timely and leakage-free manner is critical for normal functioning of endomembrane systems, hence membrane fission is performed by specialized and tightly-regulated protein machinery assembling on the neck. While our current mechanistic understanding of fission, in life and disease, is heavily based upon in vitro reconstitution approaches, such approaches rarely (if at all) reproduce confined and crowded environment of the neck. Instead, in vitro reconstitution has been mostly performed using large (sub-micron to micron scale) membrane templates of various physico-chemical properties, resulting in controversial outcomes and precluding rigorous mechanistic analysis of fission. This project is focused on creation of the next- generation in vitro approaches that reconstruct and quantify membrane fission at physiological length/time scales. We will combine nanotechnology with modern biophysical approaches and protein engineering to solve the long-standing puzzle of membrane fission mediated by the proteins of dynamin superfamily, which are intimately involved in intracellular fusion/fission and directly linked to various human pathologies. We will approach this problem from several different angles: - We will perform single-molecule analysis of dynamin oligomerization on membrane surfaces with precisely (2 nm) calibrated curvature (10-1 to 10-2 nm range) to identify and characterize elementary mechano-chemical units assembled by dynamin. We will determine (i) the pathways of dynamin oligomerization/self-assembly on a curved membrane surface, (ii) the size/geometrical arrangement of minimal oligomers capable of cooperative GTP hydrolysis and (iii) the effects of membrane curvature on self-assembly and GTPase activity of small dynamin oligomers. - We will assess membrane activity of individual dynamin oligomers (dimers and higher order multimers) at nano-confined membrane templates to determine how the force fields produced by dynamin are coupled to lipid rearrangements throughout fission. We will (i) measure the local forces produced by different dynamin oligomers and quantify associated membrane deformations and instabilities, and (ii) determine pathway(s) of lipid rearrangements and their dependence on the size/geometry of dynamin complexes and geometrical/mechanical parameters of membrane templates. - We will analyze effects of auxiliary proteins and critical mutations of dynamins, compare the self- assembly and fission pathways for different members of dynamin superfamily to distinguish general and protein-specific parameters (perhaps, even specific pathways) of membrane fission and unravel molecular mechanisms behind functional evolution and regulation of dynamin fission machinery.

项目总结