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Continued Development and Maintenance of the UltraScan Software

Continued Development and Maintenance of the UltraScan Software
UltraScan 软件的持续开发和维护
批准号:
10673959
负责人:
Emre H. Brookes
金额:
$29.31万
依托单位:
依托单位国家:
美国
项目类别:
财政年份:
2016
资助国家:
美国
项目状态:
已结题
起止时间:
2016-08-01 至 2024-07-31

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Project Summary/Abstract We propose to continue development and support for the UltraScan-III (US3) software suite and develop new code and methods to address challenging biomedical research questions that can be solved with the latest instruments available for analytical ultracentrifugation and at beamlines for small-angle X-ray and neutron scattering experiments (SAXS/SANS) experiments. UltraScan is a comprehensive toolkit for the analysis of data from hydrodynamic experiments and simulations. Such experiments include analytical ultracentrifugation, SAXS/SANS, as well as bead modeling simulations. Support for this project will assure continued availability of a mature multi-platform analysis suite with important and unique capabilities not found in any other software packages. Chief among them are tight integration of supercomputing capabilities, LIMS support for collaboration, and specialized analysis routines. US3 enjoys widespread use in the AUC and SAXS/SANS communities, and offers the most robust optimization and simulation algorithms available, resulting in unmatched detail. UltraScan provides the highest throughput, a flexible, modern GUI, and a comprehensive list of analysis routines. Proposed developments include automated data acquisition and analysis workflows, improvements in the fitting of floating data, improved two-dimensional grids, support for density distribution analysis critical for the accurate characterization and quantification of viral vectors, lipid nanoparticles loaded with cancer drugs or nucleic acids, and other vectors used for the delivery of medicines or CRISPR technology.
期刊论文(41)
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科研奖励(0)
会议论文
DOI: 10.1038/s41467-021-22253-6
发表时间: 2021-03-31
期刊: Nature communications
影响因子: 16.6
作者: [Horne CR, Venugopal H, Panjikar S, Wood DM, Henrickson A, Brookes E, North RA, Murphy JM, Friemann R, Griffin MDW, Ramm G, Demeler B, Dobson RCJ]
通讯作者: Dobson RCJ
DOI: 10.1107/s1600576723005848
发表时间: 2023-08-01
期刊: JOURNAL OF APPLIED CRYSTALLOGRAPHY
影响因子: 6.1
作者: [Larsen, Andreas Haahr, Brookes, Emre, Pedersen, Martin Cramer, Kirkensgaard, Jacob Judas Kain]
通讯作者: Kirkensgaard, Jacob Judas Kain
Beyond the US-SOMO-AF database: a new website for hydrodynamic, structural, and circular dichroism calculations on user-supplied structures.
超越 US-SOMO-AF 数据库:一个新网站,用于对用户提供的结构进行流体动力学、结构和圆二色性计算。
DOI: 10.1007/s00249-023-01636-1
发表时间: 2023
期刊: European biophysics journal : EBJ
影响因子: --
作者: [Brookes,EmreH, Rocco,Mattia]
通讯作者: Rocco,Mattia
DOI: 10.1371/journal.pcbi.1011749
发表时间: 2024-01
期刊: PLoS computational biology
影响因子: 4.3
作者: []
通讯作者:
24
    Continued Development and Maintenance of the UltraScan Software
    • 批准号:
      10210402
    • 项目类别:
    • 资助金额:
      $29.31万
    • 财政年份:
      2016
    • 负责人:
      Emre H. Brookes
    • 依托单位:
    Continued Development and Maintenance of the UltraScan Software
    • 批准号:
      10461796
    • 项目类别:
    • 资助金额:
      $29.31万
    • 财政年份:
      2016
    • 负责人:
      Emre H. Brookes
    • 依托单位:
    Continued Development and Maintenance of the UltraScan Software
    • 批准号:
      9973635
    • 项目类别:
    • 资助金额:
      $29.31万
    • 财政年份:
      2016
    • 负责人:
      Emre H. Brookes
    • 依托单位:
    Development of an UltraScan Meta-Scheduler for HPC Job Submission
    • 批准号:
      10609259
    • 项目类别:
    • 资助金额:
      $24.19万
    • 财政年份:
      2016
    • 负责人:
      Emre H. Brookes
    • 依托单位:
    海外基金