Continued Development and Maintenance of the UltraScan Software
Continued Development and Maintenance of the UltraScan Software
批准号:
10673959
负责人:
Emre H. Brookes
金额:
$29.31万
依托单位:
依托单位国家:
美国
项目类别:
财政年份:
2016
资助国家:
美国
项目状态:
已结题
起止时间:
2016-08-01 至 2024-07-31
关键词:
APBA1 geneAddressAgingAlgorithmsAnisotropyAntineoplastic AgentsArchitectureAustraliaBiochemistryBiomedical ResearchBiophysicsBiopolymersCRISPR/Cas technologyCanadaCellular biologyCodeCollaborationsCommunitiesComplexComputer softwareDataData AnalysesData ProtectionData SecurityDatabasesDevelopmentDiffusionDimensionsDiseaseDrug TargetingEnsureEuropeFinlandFluorescenceFundingFutureHIVHigh Performance ComputingIndiaInfrastructureInstitutionIntuitionInvestigationKineticsLaboratoriesLibrariesLicensingLinuxMaintenanceMalignant NeoplasmsManagement Information SystemsMeasuresMedicineMethodsModernizationMolecularMolecular StructureNetwork-basedNeurodegenerative DisordersNeutronsNucleic AcidsOperating SystemPeer ReviewPropertyPublicationsReactionRecordsResearchResolutionResourcesRoentgen RaysScienceServicesSideSmall Interfering RNASpectrum AnalysisSupercomputingSupport SystemSystemSystems AnalysisTechniquesTrainingUnited States National Institutes of HealthUpdateViral VectorWorkX-Ray Crystallographyanalytical ultracentrifugationautomated analysisbasebeamlinebiophysical analysiscode developmentdata acquisitiondensitydesigndrug testingexperimental studyflexibilityhigh throughput analysisimprovedinstrumentinstrumentationlipid nanoparticlemacromolecular assemblymaterials sciencemiddlewaremodels and simulationnanosciencenovelopen sourceoperationsimulationsoftware developmentstructural biologysupercomputertherapeutic developmenttooltwo-dimensionaluser protectionvector
中文摘要
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英文摘要
Project Summary/Abstract
We propose to continue development and support for the UltraScan-III (US3) software suite and develop new
code and methods to address challenging biomedical research questions that can be solved with the latest
instruments available for analytical ultracentrifugation and at beamlines for small-angle X-ray and neutron
scattering experiments (SAXS/SANS) experiments. UltraScan is a comprehensive toolkit for the analysis of
data from hydrodynamic experiments and simulations. Such experiments include analytical ultracentrifugation,
SAXS/SANS, as well as bead modeling simulations. Support for this project will assure continued availability of
a mature multi-platform analysis suite with important and unique capabilities not found in any other software
packages. Chief among them are tight integration of supercomputing capabilities, LIMS support for
collaboration, and specialized analysis routines. US3 enjoys widespread use in the AUC and SAXS/SANS
communities, and offers the most robust optimization and simulation algorithms available, resulting in
unmatched detail. UltraScan provides the highest throughput, a flexible, modern GUI, and a comprehensive list
of analysis routines. Proposed developments include automated data acquisition and analysis workflows,
improvements in the fitting of floating data, improved two-dimensional grids, support for density distribution
analysis critical for the accurate characterization and quantification of viral vectors, lipid nanoparticles loaded
with cancer drugs or nucleic acids, and other vectors used for the delivery of medicines or CRISPR technology.
期刊论文(41)
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DOI:
10.1038/s41467-021-22253-6
发表时间:
2021-03-31
期刊:
Nature communications
影响因子:
16.6
作者:
[Horne CR, Venugopal H, Panjikar S, Wood DM, Henrickson A, Brookes E, North RA, Murphy JM, Friemann R, Griffin MDW, Ramm G, Demeler B, Dobson RCJ]
通讯作者:
Dobson RCJ
DOI:
10.1107/s1600576723005848
发表时间:
2023-08-01
期刊:
JOURNAL OF APPLIED CRYSTALLOGRAPHY
影响因子:
6.1
作者:
[Larsen, Andreas Haahr, Brookes, Emre, Pedersen, Martin Cramer, Kirkensgaard, Jacob Judas Kain]
通讯作者:
Kirkensgaard, Jacob Judas Kain
Beyond the US-SOMO-AF database: a new website for hydrodynamic, structural, and circular dichroism calculations on user-supplied structures.
超越 US-SOMO-AF 数据库:一个新网站,用于对用户提供的结构进行流体动力学、结构和圆二色性计算。
DOI:
10.1007/s00249-023-01636-1
发表时间:
2023
期刊:
European biophysics journal : EBJ
影响因子:
--
作者:
[Brookes,EmreH, Rocco,Mattia]
通讯作者:
Rocco,Mattia
DOI:
10.1371/journal.pcbi.1011749
发表时间:
2024-01
期刊:
PLoS computational biology
影响因子:
4.3
作者:
[]
通讯作者:
Molecular Architecture of the Antiophidic Protein DM64 and its Binding Specificity to Myotoxin II From Bothrops asper Venom.
抗嗜蛋蛋白DM64的分子结构及其与Bothrops Asper毒液中肌毒素II的结合特异性。
DOI:
10.3389/fmolb.2021.787368
发表时间:
2021
期刊:
Frontiers in molecular biosciences
影响因子:
5
作者:
[Soares BS, Rocha SLG, Bastos VA, Lima DB, Carvalho PC, Gozzo FC, Demeler B, Williams TL, Arnold J, Henrickson A, Jørgensen TJD, Souza TACB, Perales J, Valente RH, Lomonte B, Gomes-Neto F, Neves-Ferreira AGC]
通讯作者:
Neves-Ferreira AGC
共 24 条
Continued Development and Maintenance of the UltraScan Software
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批准号:10210402
-
项目类别:
-
资助金额:$29.31万
-
财政年份:2016
-
负责人:Emre H. Brookes
-
依托单位:
Continued Development and Maintenance of the UltraScan Software
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批准号:10461796
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项目类别:
-
资助金额:$29.31万
-
财政年份:2016
-
负责人:Emre H. Brookes
-
依托单位:
Continued Development and Maintenance of the UltraScan Software
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批准号:9973635
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项目类别:
-
资助金额:$29.31万
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财政年份:2016
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负责人:Emre H. Brookes
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依托单位:
Development of an UltraScan Meta-Scheduler for HPC Job Submission
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批准号:10609259
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项目类别:
-
资助金额:$24.19万
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财政年份:2016
-
负责人:Emre H. Brookes
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依托单位:
Struct. Invest. of Hsp70 and TGFb by Solution Studies and High-Perform. Comput.
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批准号:8699784
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项目类别:
-
资助金额:$12.39万
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财政年份:2010
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负责人:Emre H. Brookes
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依托单位:
Struct. Invest. of Hsp70 and TGFb by Solution Studies and High-Perform. Comput.
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批准号:7989929
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项目类别:
-
资助金额:$12.47万
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财政年份:2010
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负责人:Emre H. Brookes
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依托单位:
Struct. Invest. of Hsp70 and TGFb by Solution Studies and High-Perform. Comput.
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批准号:8529559
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项目类别:
-
资助金额:$12.39万
-
财政年份:2010
-
负责人:Emre H. Brookes
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依托单位:
Struct. Invest. of Hsp70 and TGFb by Solution Studies and High-Perform. Comput.
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批准号:8118613
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项目类别:
-
资助金额:$12.43万
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财政年份:2010
-
负责人:Emre H. Brookes
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依托单位:
Struct. Invest. of Hsp70 and TGFb by Solution Studies and High-Perform. Comput.
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批准号:8306220
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项目类别:
-
资助金额:$12.39万
-
财政年份:2010
-
负责人:Emre H. Brookes
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依托单位:
海外基金