Resource Core C - Skin Genomics, Transcriptomics, and Epigenetics Core

资源核心 C - 皮肤基因组学、转录组学和表观遗传学核心

• 批准号: 10676790
• 负责人: Anne Mary Bowcock
• 金额: $ 16.19万
• 依托单位: ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI
• 依托单位国家: 美国
• 财政年份: 2021
• 资助国家: 美国
• 起止时间: 2021-09-01 至 2026-08-31
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10676790
• 关键词: 3-Dimensional; ATAC-seq; Acceleration; Address; Affect; Alternative Splicing; Anatomy; Animal Model; Area; Base Sequence; Binding Sites; Biological; Biology; Cells; Cellular Indexing of Transcriptomes and Epitopes by Sequencing; Center Core Grants; ChIP-seq; Chromatin; Chromosomes; Collaborations; Communities; Consultations; Coupled; DNA; DNA Sequence; DNA sequencing; Data; Data Analyses; Development; Disease; Disparate; Distant; Elements; Enhancers; Ensure; Epigenetic Process; Epitopes; Experimental Designs; Faculty; Follow-Up Studies; Fostering; Funding; Gene Expression; Gene Expression Profiling; Genes; Genetic Transcription; Genome; Genomics; Goals; Heterogeneity; Hi-C; Histones; Homeostasis; Human Resources; Individual; Institution; Intake; Link; Location; Measurement; Medicine; Messenger RNA; Methods; Molecular Profiling; Nucleic Acid Regulatory Sequences; Pathogenesis; Poly(A)+ RNA; Process; Protein Isoforms; RNA; RNA Splicing; Reagent; Regulatory Element; Research; Research Personnel; Research Project Grants; Resolution; Resources; Scholarship; Service provision; Services; Skin; Small RNA; Specimen; Standardization; Structure; Surveys; Technology; Therapeutic Intervention; Tissues; Training; Transcript; Validation; Variant; Visualization; biological systems; cell type; cost; dashboard; data management; design; disease classification; epigenome; epigenomics; exome; exome sequencing; gene network; genetic analysis; genome sequencing; genome wide association study; genome-wide; histone modification; improved; insight; instrumentation; member; multiple omics; novel; promoter; risk variant; single cell analysis; single cell sequencing; single cell technology; single molecule; single-cell RNA sequencing; skin disorder; skin organogenesis; targeted sequencing; tool; transcription factor; transcriptome; transcriptome sequencing; transcriptomics; whole genome

Summary – Resource Core C The results of surveying the Research Community of the SBDRC at Mount Sinai indicated that a top strategic priority is access to state-of-the-art and integrated methods for genomics, transcriptomics, and epigenetic analysis of the skin in normal homeostasis and in disease. Core C will provide state-of-the-art start-to-finish technologies for these cutting-edge approaches. The Core will leverage existing campus resources, such as instrumentation and extensive expertise at both faculty and researcher levels, to provide technical and intellectual support to the SBDRC Research Community. Core personnel will be embedded in skin research labs where they will become familiarized with skin as a biological system and the questions being asked; this will help to ensure that they can most effectively advise lab personnel on experimental design and services to address the biological questions; conversely lab personnel will become more familiar with the technological approaches available to them. Specifically, Core C will provide SBDRC investigators with consultation and services centered on NexGen technologies. A robust organizational hub (the Smartsheet dashboard) will be utilized for specimen and project in-take, both internally and externally. As part of Aim 1, Core C will facilitate access to genomics (exome sequencing, whole genome sequencing and targeted capture) and transcriptomic technologies (bulk RNA-seq, poly(A) RNA-seq, small RNA-seq) in healthy and diseased skin. Access to long- read single molecule sequencing (SMRT/PacBio) will facilitate the analysis of structural changes in DNA and the precise identification of RNA isoforms due to altered splicing. Services in Aim 2 will focus on state-of-the art epigenomic studies to identify regulatory elements operating in the skin (ATAC-seq, ChIP-seq, CUT&RUN). Interactions across regulatory elements (enhancers and promoters) will be identified by Hi-C. Integration with transcriptomic findings will confirm target genes and identify altered networks operating in skin homeostasis and disease. Aim 3 will focus on cellular heterogeneity, providing single cell technologies for transcript (scRNA-seq) and epigenetic (scATAC-seq) analyses in single cells. CITE-Seq will provide simultaneous epitope and transcriptome measurements of single cells. Services from Aim 3 will also include spatial transcriptomics technology permitting the spatial resolution of RNA-seq data, and thereby the locations of all mRNAs in individual tissue sections. As novel “omics” technologies are developed that would enhance skin biology research, they will be incorporated into this Core’s activities. Data will be distributed to Core D where computational biologists will perform rigorous analysis, visualization and data management. Overall, Core C is an essential and integral component of the Center with the goal of facilitating scientific discoveries in skin biology and skin disease areas by providing cutting-edge multi-omics studies to skin researchers.

摘要-资源核心C