BioCARS: Structural Dynamics and Biological Mechanisms

BioCARS：结构动力学和生物机制

• 批准号: 10093063
• 负责人: JOHN Keith MOFFAT
• 金额: $ 128.97万
• 依托单位: UNIVERSITY OF CHICAGO
• 依托单位国家: 美国
• 财政年份: 2019
• 资助国家: 美国
• 起止时间: 2019-02-01 至 2024-01-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10093063
• 关键词: Address; Algorithms; Area; Automobile Driving; Biological; Biological Process; Catalysis; Characteristics; Charge; Collaborations; Communities; Complex; Coupled; Crystallization; Crystallography; Data; Data Analyses; Data Set; Development; Devices; Disease; Educational workshop; Engineering; Environment; Enzymes; Experimental Designs; General Population; Goals; Image; Improve Access; Knowledge; Laboratories; Measurement; Methods; Microfluidics; Modernization; Molecular; Molecular Conformation; Motion; Pharmacology; Photons; Physiological; Printed Media; Process; Proteins; Regulation; Resolution; Roentgen Rays; Sampling; Science; Services; Signal Transduction; Software Tools; Source; Structure; Synchrotrons; System; Technology; Temperature; Therapeutic; Time; Training; Update; Work; X ray diffraction analysis; X-Ray Crystallography; base; chemical reaction; computerized data processing; design; detector; electric field; experimental study; high school; interest; macromolecule; meetings; new technology; next generation; novel; novel strategies; open source; posters; practical application; prospective; research and development; research facility; symposium; technology development; technology research and development; time use; tool; transmission process; undergraduate student

Abstract A major goal is biomedical science is to move beyond static images of proteins and other biological macromolecules to the internal dynamics underlying their function. This level of study is necessary to understand how these molecules work, to engineer new functions, and to rationally develop therapeutics. In this application, we propose two technological research and development projects that take advantage of the special characteristics of the BioCARS national synchrotron facility to address these goals. In the first, TR&D 1, we describe time-resolved serial micro-crystallography (TR-SMX) coupled with initiation of chemical reactions within molecules. This approach is enabled by the high intensity and tight focusing of X-rays at BioCARS, the availability of a large area, fast detectors, and the use of novel crystal injectors and microfluidic mixers. TR- SMX enables users to observe the dynamics of molecules as they execute their biological function at physiological temperatures. In the second, TR&D 2, we describe electric field-stimulated X-ray crystallography (EFX), a new method visualizing conformational changes within proteins and other biological macromolecules. This method uses external electric fields to induce global, subtle motions of atoms within proteins, with readout using time-resolved X-ray diffraction. Initial work demonstrates the practical application of EFX, and confirms the ability to globally excite motions throughout a protein molecule, including those of biological relevance. Since charges and dipoles are universally present in macromolecules, EFX represents, in principle, a general approach for intramolecular dynamics. We describe several user-based driving biomedical projects and collaborative and service projects that cover a wide range of important problems and push both technologies. User training and active approaches to dissemination to both expert and non-expert, wider audiences will enable broad use of the new technologies by the scientific community.

摘要 生物医学科学的一个主要目标是超越蛋白质和其他生物物质的静态图像， 大分子与其功能背后的内部动力学之间的关系。这种程度的学习是必要的， 了解这些分子如何工作，设计新的功能，并合理开发治疗方法。在 本申请，我们提出了两个技术研究和开发项目，利用 BioCARS国家同步加速器设施的特殊特性来实现这些目标。在第一个，TR&D 1， 我们描述了时间分辨连续微晶体学（TR-SMX）与化学反应引发相结合 在分子中。这种方法是由BioCARS的高强度和紧密聚焦的X射线实现的， 大面积、快速检测器的可用性，以及新型晶体注射器和微流体混合器的使用。TR- SMX使用户能够观察分子在执行其生物功能时的动力学， 生理温度。在第二部分TR& D2中，我们描述了电场激发的X射线晶体学 (EFX)这是一种可视化蛋白质和其他生物大分子构象变化的新方法。 这种方法使用外部电场来诱导蛋白质内原子的全局微妙运动， 使用时间分辨X射线衍射。初步工作演示了EFX的实际应用，并证实了 在整个蛋白质分子中全局激发运动的能力，包括那些与生物学相关的运动。 由于电荷和偶极子普遍存在于大分子中，因此EFX原则上代表一般的 分子内动力学方法。我们描述了几个基于用户的驱动生物医学项目， 合作和服务项目，涵盖广泛的重要问题，并推动两种技术。 用户培训和向专家和非专家传播的积极做法，将使更多的受众 使科学界能够广泛使用新技术。

项目成果

Microsecond dynamics control the HIV-1 Envelope conformation.

• DOI: 10.1126/sciadv.adj0396
• 发表时间: 2024-02-02
• 期刊: SCIENCE ADVANCES
• 影响因子: 13.6
• 作者: Bennett, Ashley L.;Edwards, Robert;Kosheleva, Irina;Saunders, Carrie;Bililign, Yishak;Williams, Ashliegh;Bubphamala, Pimthada;Manosouri, Katayoun;Anasti, Kara;Saunders, Kevin O.;Alam, S. Munir;Haynes, Barton F.;Acharya, Priyamvada;Henderson, Rory
• 通讯作者: Henderson, Rory

Microbial production of megadalton titin yields fibers with advantageous mechanical properties.

• DOI: 10.1038/s41467-021-25360-6
• 发表时间: 2021-08-30
• 期刊: Nature communications
• 影响因子: 16.6
• 作者: Bowen CH;Sargent CJ;Wang A;Zhu Y;Chang X;Li J;Mu X;Galazka JM;Jun YS;Keten S;Zhang F
• 通讯作者: Zhang F

Resolving conformational changes that mediate a two-step catalytic mechanism in a model enzyme.

解决模型酶中介导两步催化机制的构象变化。

• DOI: 10.1101/2023.06.02.543507
• 发表时间: 2023
• 期刊: bioRxiv : the preprint server for biology
• 作者: Greisman,JackB;Dalton,KevinM;Brookner,DennisE;Klureza,MargaretA;Sheehan,CandiceJ;Kim,In-Sik;Henning,RobertW;Russi,Silvia;Hekstra,DoekeR
• 通讯作者: Hekstra,DoekeR

Complementarity of neutron, XFEL and synchrotron crystallography for defining the structures of metalloenzymes at room temperature.

• DOI: 10.1107/s2052252522006418
• 发表时间: 2022-09-01
• 期刊: IUCrJ
• 影响因子: 3.9

Structural dynamics of a thermally silent triiron(II) spin crossover defect grid complex.

• DOI: 10.1039/d3dt02067c
• 发表时间: 2023-09-13
• 期刊: Dalton transactions (Cambridge, England : 2003)