Democratization of Data Analysis in Life Sciences Through Galaxy
通过 Galaxy 实现生命科学数据分析的民主化
基本信息
- 批准号:10090025
- 负责人:
- 金额:$ 191万
- 依托单位:
- 依托单位国家:美国
- 项目类别:
- 财政年份:2012
- 资助国家:美国
- 起止时间:2012-02-19 至 2026-01-31
- 项目状态:未结题
- 来源:
- 关键词:AdministratorAdoptedAreaBeesBiologicalBiological SciencesBiologyCollaborationsCollectionCommunitiesComplexComputer AnalysisComputer softwareDataData AnalysesData ScienceData SetDevelopmentEducation and OutreachEducational workshopEngineeringGalaxyGenomicsGoalsGrowthHumanInfrastructureLeadLeadershipMethodsModernizationResearchResearch PersonnelResearch TrainingSamplingSecuritySystemTechnologyTrainingWorkdesignopen sourcerapid growthskillstool
项目摘要
Project Summary
For over a decade, the Galaxy Project (https://galaxyproject.org/) has worked to solve key issues plaguing
modern data intensive biology -- the ability of researchers to access cutting-edge analysis methods, to share
analysis results transparently, and to precisely reproduce complex computational analyses. Galaxy has
become one of the largest and most widely used open source platforms for biological data science. Promoting
openness and collaboration in all facets of the project, from technical decisions to training and leadership, has
enabled us to build a vibrant community of users, developers, system engineers, and educators who
continuously contribute new software features, add the latest tools, adopt to the most modern infrastructure,
author training materials, and lead research and training workshops. Genomics research is continuously
evolving, and current challenges include the rapid growth in size and complexity of new datasets, the
increasing availability of controlled-access datasets with human genomic components, and the continuing
expansion in the breadth of research areas capable of generating high throughput data. The core Galaxy
development team submitting this proposal will respond to these challenges by focusing on the following key
priorities:
- Rearchitect Galaxy for scalability and security using software container technologies;
- Design new user interface (UI) for working with thousands of tools, workflows, and samples;
- Enable interactive exploratory data analysis in Galaxy;
- Facilitate community growth and support;
- Enable effective training and outreach.
Concentrating on these broad priorities will allow us to achieve the ultimate goal of the Galaxy Project:
developing a data analysis medium connecting biomedical experts across the full spectrum of skill sets,
scientific domains, and research practices. For biomedical researchers it will provide a powerful analysis
platform populated with the latest tools and data. For tool developers it will provide a community-supported
mechanism for deploying tools before a wide audience of users. For system administrators and engineers it will
provide a framework they will feel comfortable deploying on any infrastructure. For educators it will provide a
comprehensive collection of materials covering most data analysis needs and an infrastructure for delivering
interactive, hands-on training workshops for audiences of different sizes.
项目概要
十多年来,银河计划 (https://galaxyproject.org/) 一直致力于解决困扰我们的关键问题
现代数据密集型生物学——研究人员获取尖端分析方法、分享的能力
透明地分析结果,并精确地再现复杂的计算分析。银河有
成为生物数据科学最大、使用最广泛的开源平台之一。推广
从技术决策到培训和领导力,项目各个方面的开放性和协作性
使我们能够建立一个由用户、开发人员、系统工程师和教育工作者组成的充满活力的社区
不断贡献新的软件功能,添加最新的工具,采用最现代化的基础设施,
编写培训材料,并领导研究和培训研讨会。基因组学研究不断
不断发展,当前的挑战包括新数据集的规模和复杂性的快速增长,
增加具有人类基因组成分的受控访问数据集的可用性,以及持续的
扩展能够生成高通量数据的研究领域的广度。银河核心
提交此提案的开发团队将通过重点关注以下关键点来应对这些挑战
优先事项:
- 使用软件容器技术重新架构 Galaxy,以实现可扩展性和安全性;
- 设计新的用户界面 (UI),以使用数千种工具、工作流程和示例;
- 在 Galaxy 中启用交互式探索性数据分析;
- 促进社区发展和支持;
- 实现有效的培训和推广。
专注于这些广泛的优先事项将使我们能够实现银河计划的最终目标:
开发一种数据分析媒介,将各种技能的生物医学专家联系起来,
科学领域和研究实践。对于生物医学研究人员来说,它将提供强大的分析
平台填充了最新的工具和数据。对于工具开发人员来说,它将提供社区支持的
在广大用户面前部署工具的机制。对于系统管理员和工程师来说
提供一个他们可以轻松部署在任何基础设施上的框架。对于教育工作者来说,它将提供
涵盖大多数数据分析需求的全面材料收集和交付基础设施
为不同规模的观众举办互动式实践培训研讨会。
项目成果
期刊论文数量(0)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
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ANTON NEKRUTENKO的其他文献
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{{ truncateString('ANTON NEKRUTENKO', 18)}}的其他基金
Turning big data analysis infrastructure for HIV research
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10214719 - 财政年份:2020
- 资助金额:
$ 191万 - 项目类别:
Tuning big data analysis infrastructure for HIV research
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- 批准号:
10170221 - 财政年份:2017
- 资助金额:
$ 191万 - 项目类别:
Democratization of Data Analysis in Life Sciences Through Galaxy
通过 Galaxy 实现生命科学数据分析的民主化
- 批准号:
8432034 - 财政年份:2012
- 资助金额:
$ 191万 - 项目类别:
Democratization of Data Analysis in Life Sciences Through Galaxy
通过 Galaxy 实现生命科学数据分析的民主化
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10576907 - 财政年份:2012
- 资助金额:
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Democratization of Data Analysis in Life Sciences Through Galaxy
通过 Galaxy 实现生命科学数据分析的民主化
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10356796 - 财政年份:2012
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$ 191万 - 项目类别:
Democratization of Data Analysis in Life Sciences Through Galaxy
通过 Galaxy 实现生命科学数据分析的民主化
- 批准号:
8243028 - 财政年份:2012
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$ 191万 - 项目类别:
Democratization of Data Analysis in Life Sciences Through Galaxy
通过 Galaxy 实现生命科学数据分析的民主化
- 批准号:
8606866 - 财政年份:2012
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