The Integration of Trans-omics for Precision Medicine (TOPMED) and Other Heart, Lung, Blood and Sleep (HLBS) Data Sets with the Data Commons

精准医学跨组学 (TOPMED) 和其他心、肺、血液和睡眠 (HLBS) 数据集与数据共享的集成

• 批准号: 10611205
• 负责人: Paul Avillach
• 金额: $ 40.74万
• 依托单位: HARVARD MEDICAL SCHOOL
• 依托单位国家: 美国
• 财政年份: 2017
• 资助国家: 美国
• 起止时间: 2017-09-30 至 2022-09-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10611205
• 关键词: Blood; Data Commons; Data Set; Heart; Lung; Sleep; Text; Trans-Omics for Precision Medicine

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项目成果

Scalability and cost-effectiveness analysis of whole genome-wide association studies on Google Cloud Platform and Amazon Web Services.

• DOI: 10.1093/jamia/ocaa068
• 发表时间: 2020-09-01
• 期刊: Journal of the American Medical Informatics Association : JAMIA
• 作者: Krissaane I;De Niz C;Gutiérrez-Sacristán A;Korodi G;Ede N;Kumar R;Lyons J;Manrai A;Patel C;Kohane I;Avillach P
• 通讯作者: Avillach P

dbgap2x: an R package to explore and extract data from the database of Genotypes and Phenotypes (dbGaP).

dbgap2x：一个 R 包，用于从基因型和表型 (dbGaP) 数据库中探索和提取数据。

• DOI: 10.1093/bioinformatics/btz680
• 发表时间: 2020
• 期刊: Bioinformatics (Oxford, England)
• 作者: Versmée,Grégoire;Versmée,Laura;Dusenne,Mikaël;Jalali,Niloofar;Avillach,Paul
• 通讯作者: Avillach,Paul

STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci.

• DOI: 10.1186/s13059-022-02826-4
• 发表时间: 2022-12-14
• 期刊: Genome biology
• 影响因子: 12.3

Long-term Survival after Hematopoietic Cell Transplant for Sickle Cell Disease Compared to the United States Population.

• DOI: 10.1016/j.jtct.2022.03.014
• 发表时间: 2022-06
• 期刊: TRANSPLANTATION AND CELLULAR THERAPY
• 影响因子: 3.2
• 作者: St Martin, Andrew;Hebert, Kyle M.;Serret-Larmande, Arnaud;Jouhet, Vianney;Hughes, Emily;Stedman, Jason;DeSain, Thomas;Pillion, Danielle;Lyons, Jessica C.;Steinert, Patricia;Avillach, Paul;Eapen, Mary
• 通讯作者: Eapen, Mary

Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research.

• DOI: 10.1093/jamia/ocad048
• 发表时间: 2023-06-20
• 期刊: JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
• 影响因子: 6.4
• 作者: Ahalt, Stan;Avillach, Paul;Boyles, Rebecca;Bradford, Kira;Cox, Steven;Davis-Dusenbery, Brandi;Grossman, Robert L.;Krishnamurthy, Ashok;Manning, Alisa;Paten, Benedict;Philippakis, Anthony;Borecki, Ingrid;Chen, Shu Hui;Kaltman, Jon;Ladwa, Sweta;Schwartz, Chip;Thomson, Alastair;Davis, Sarah;Leaf, Alison;Lyons, Jessica;Sheets, Elizabeth;Bis, Joshua C.;Conomos, Matthew;Culotti, Alessandro;Desain, Thomas;Digiovanna, Jack;Domazet, Milan;Gogarten, Stephanie;Gutierrez-Sacristan, Alba;Harris, Tim;Heavner, Ben;Jain, Deepti;O'Connor, Brian;Osborn, Kevin;Pillion, Danielle;Pleiness, Jacob;Rice, Ken;Rupp, Garrett;Serret-Larmande, Arnaud;Smith, Albert;Stedman, Jason P.;Stilp, Adrienne;Barsanti, Teresa;Cheadle, John;Erdmann, Christopher;Farlow, Brandy;Gartland-Gray, Allie;Hayes, Julie;Hiles, Hannah;Kerr, Paul;Lenhardt, Chris;Madden, Tom;Mieczkowska, Joanna O.;Miller, Amanda;Patton, Patrick;Rathbun, Marcie;Suber, Stephanie;Asare, Joe
• 通讯作者: Asare, Joe