Regulation of DNA Damage Induced Genes by Yeast TAFIIs

酵母TAFII对DNA损伤诱导基因的调控

• 批准号: 7882088
• 负责人: JOSEPH C REESE
• 金额: $ 28.47万
• 依托单位: PENNSYLVANIA STATE UNIVERSITY, THE
• 依托单位国家: 美国
• 财政年份: 2009
• 资助国家: 美国
• 起止时间: 2009-08-03 至 2011-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7882088
• 关键词: Biochemical; Birth; Candidate Disease Gene; Cell Nucleus; Cells; Complement; Complex; Cytoplasm; DNA Damage; DNA Microarray Chip; DNA Sequence; Data; Disease; Elongation Factor; Event; Gene Expression; Gene Expression Regulation; General Transcription Factors; Genes; Genetic; Genetic Transcription; Genome; Genomics; Goals; Health; Human; Knowledge; Left; Link; Mediating; Mediator of activation protein; Messenger RNA; Modeling; Molecular; Molecular Genetics; Nature; Play; Post-Transcriptional Regulation; Process; Proteins; Publishing; Recruitment Activity; Regulation; Role; SAGA; Saccharomycetales; Sequence-Specific DNA Binding Protein; Site; Specific qualifier value; Staging; Syndrome; System; Testing; Transcription Process; Transport Process; Work; Yeasts; base; chromatin remodeling; fascinate; genetic analysis; human disease; insight; novel; transcription factor

DESCRIPTION (provided by applicant): The regulation of gene expression is a fundamental process in cells, and alterations in this process have been linked to numerous disease states in humans. It is regulated at multiple levels, requiring highly coordinated and integrated events including chromatin remodeling, initiation, elongation, processing and ultimately the destruction of mRNA. Determining how these events are coordinated is central to understanding gene expression. The overall objective of this proposal is to understand how transcription factor complexes coordinate multiple steps in gene regulation. This proposal will examine the functions of the Ccr4-Not complex, exploiting the powerful genetic system of yeast. The Ccr4-Not complex has many ties to the general transcription factor complex TFIID, particularly the TAFII subunits. Genetic, biochemical and molecular approaches are proposed. Aim 1 will characterize the functions of the Ccr4- Not transcription complex in the process of transcription. This complex displays multiple physical and genetic links to TFIID, the general transcription machinery and elongation factors. Its role in multiple stages in the transcription cycle will be examined using RNR3 as a model gene. Aim 2 will identify the targeting mechanism for Ccr4-Not. It regulates a subset of genes, and appears not be universally required for all transcription in the cell. We will explore the DNA sequence and transcription factor requirements for its recruitment and function at RNR3. Aim 3 will employ genomics based approaches to identify novel Ccr4-Not dependent genes and identify the features of the genome that specifies regulation by this complex. The intersection of these approaches will allow for a greater understanding of the coordination of multiple steps in transcription. The completion of these aims will: (1) uncover how multiple steps in gene expression are coordinated and regulated; (2) define the functions of a highly conserved eukaryotic transcription factor complex implicated in human disease; (3) lay the groundwork for identifying how specific mRNAs are marked for post-transcriptional control. Project Narrative - Relevance: Cells require precise control over the expression of their genes, and numerous human diseases and syndromes are caused by disturbances in gene expression. A multitude of transcription factors coordinate their activities to regulate this important process. The goal of the work described here is to understand how transcription factors control the level of gene expression; thus, completion of this work is directly relevant to human health.

描述（由申请人提供）：基因表达的调节是细胞中的一个基本过程，并且该过程的改变与人类的多种疾病状态有关。它在多个层面上受到调节，需要高度协调和整合的事件，包括染色质重塑、起始、延伸、加工和最终 mRNA 的破坏。确定这些事件如何协调对于理解基因表达至关重要。该提案的总体目标是了解转录因子复合物如何协调基因调控的多个步骤。该提案将利用酵母强大的遗传系统来检查 Ccr4-Not 复合体的功能。 Ccr4-Not 复合体与一般转录因子复合体 TFIID，特别是 TAFII 亚基有许多联系。提出了遗传、生化和分子方法。目标 1 将表征 Ccr4-Not 转录复合物在转录过程中的功能。该复合体显示出与 TFIID、通用转录机制和延伸因子的多种物理和遗传联系。我们将使用 RNR3 作为模型基因来检查其在转录周期多个阶段中的作用。目标 2 将确定 Ccr4-Not 的靶向机制。它调节基因的子集，并且似乎不是细胞中所有转录所普遍需要的。我们将探索其在 RNR3 中的招募和功能的 DNA 序列和转录因子要求。目标 3 将采用基于基因组学的方法来识别新的 Ccr4-Not 依赖性基因，并识别指定该复合物调节的基因组特征。这些方法的交叉将有助于更好地理解转录中多个步骤的协调。这些目标的完成将：（1）揭示基因表达的多个步骤是如何协调和调节的； (2) 定义与人类疾病有关的高度保守的真核转录因子复合物的功能； (3) 为确定如何标记特定 mRNA 进行转录后控制奠定基础。 项目叙述 - 相关性：细胞需要精确控制其基因的表达，许多人类疾病和综合症是由基因表达紊乱引起的。许多转录因子协调它们的活动来调节这一重要过程。这里描述的工作的目标是了解转录因子如何控制基因表达水平；因此，这项工作的完成与人类健康直接相关。