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Methods for purification of individual nuclear pre-messenger RNA-protein complexe

单个核前信使 RNA-蛋白质复合物的纯化方法

基本信息

批准号：
7994253
负责人：
DONALD C RIO
金额：
$ 30.01万
依托单位：
UNIVERSITY OF CALIFORNIA BERKELEY
依托单位国家：
美国
项目类别：
财政年份：
2010
资助国家：
美国
起止时间：
2010-09-01 至 2014-08-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/7994253
关键词：
Affinity Binding Cell Nucleus Cells Chimera organism Chromatin Complex DNA DNA analysis Disease Drosophila genus Enzymes Fluorescent in Situ Hybridization Formaldehyde Gene Expression Genes Genetic Transcription Human Individual Introns Literature Mass Spectrum Analysis Messenger RNA Methods Nuclear Nuclear Export Nuclear RNA Nucleic Acid Hybridization Oligonucleotides Pathway interactions Pattern Property Protein Isoforms Proteins RNA RNA Interference RNA Processing RNA Splicing RNA Stability RNA-Binding Proteins Research Personnel Ribonucleoproteins Screening procedure Small Nuclear Ribonucleoproteins Solutions Source Structure Technology Telomerase Testing Transcript crosslink genome-wide locked nucleic acid mRNA Precursor messenger ribonucleoprotein protein complex protein distribution public health relevance sugar

项目摘要

DESCRIPTION (provided by applicant): This proposal attempts to develop methods for the purification and characterization of individual nuclear pre-mRNA-protein complexes. Because binding of eukaryotic RNA binding proteins to nascent transcripts occurs in the nucleus during transcription, it is believed that the particular constellation of RNA binding proteins that a given transcript acquires to form a distinct ribonucleoprotein (RNP) complex will control its RNA processing, RNA export and RNA stability. These post-transcriptional pathways are critically important for gene expression. Moreover, because >95% of human genes generate multiple transcript isoforms it is also important to find out if differentially spliced mRNA isoforms have distinct patterns of RNA binding proteins. The hypothesis being tested is that different nuclear pre-mRNAs/RNPs have distinct protein compositions which contribute to their fate. If successful, this approach would have a major impact in our understanding of how nuclear RNP structure controls the RNA processing and fates of newly transcribed messenger RNA molecules. In order to approach this question, we will: 1. Develop technology to purify individual Drosophila nuclear pre-mRNPs using biotinylated anti-sense chimeric LNA-DNA oligonucleotides targeted to specific pre-mRNAs and analyze their protein composition by mass spectrometry. This proposal will outline one specific aim that builds on the expertise of my lab in evaluating genome-wide patterns of alternative pre-mRNA splicing and the distribution of RNA splicing factors on nuclear pre-mRNAs. PUBLIC HEALTH RELEVANCE: This proposal attempts to develop methods for the purification and characterization of individual nuclear pre-mRNA-protein complexes. Because binding of eukaryotic RNA binding proteins to nascent transcripts occurs in the nucleus during transcription, it is believed that the particular constellation of RNA binding proteins that a given transcript acquires to form a distinct ribonucleoprotein (RNP) complex will control its RNA processing, RNA export and RNA stability. These post-transcriptional pathways are critically important for gene expression and can be perturbed in disease states.

描述（由申请人提供）：本提案试图开发用于纯化和表征单个核前mRNA-蛋白质复合物的方法。由于真核RNA结合蛋白与新生转录物的结合在转录期间发生在细胞核中，因此认为给定转录物获得以形成独特的核糖核蛋白（RNP）复合物的RNA结合蛋白的特定星座将控制其RNA加工、RNA输出和RNA稳定性。这些转录后途径对基因表达至关重要。此外，因为>95%的人类基因产生多种转录物同种型，所以找出差异剪接的mRNA同种型是否具有不同的RNA结合蛋白模式也很重要。正在测试的假设是，不同的核前mRNA/RNP具有不同的蛋白质组成，这有助于它们的命运。如果成功，这种方法将对我们理解核RNP结构如何控制RNA加工和新转录的信使RNA分子的命运产生重大影响。为了解决这个问题，我们将：1。开发技术，使用针对特定前mRNA的生物素化反义嵌合LNA-DNA寡核苷酸纯化单个果蝇核前mRNA，并通过质谱分析其蛋白质组成。该提案将概述一个具体的目标，该目标建立在我的实验室在评估全基因组范围内的选择性前mRNA剪接模式和RNA剪接因子在核前mRNA上的分布方面的专业知识基础上。公共卫生关系：该建议试图开发用于纯化和表征单个核前mRNA-蛋白质复合物的方法。由于真核RNA结合蛋白与新生转录物的结合在转录期间发生在细胞核中，因此认为给定转录物获得以形成独特的核糖核蛋白（RNP）复合物的RNA结合蛋白的特定星座将控制其RNA加工、RNA输出和RNA稳定性。这些转录后途径对基因表达至关重要，并且在疾病状态下可能受到干扰。