Molecular Phenotypes for Cystic Fibrosis Lung Disease

囊性纤维化肺病的分子表型

• 批准号: 8109359
• 负责人: Michael R Knowles
• 金额: $ 71.48万
• 依托单位: UNIV OF NORTH CAROLINA CHAPEL HILL
• 依托单位国家: 美国
• 财政年份: 2008
• 资助国家: 美国
• 起止时间: 2008-09-24 至 2012-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8109359
• 关键词: Address; Adopted; Affect; Age; American; Asthma; Biological; Candidate Disease Gene; Cells; Chronic Obstructive Airway Disease; Cis-Trans Tests; Clinical Research; Collection; Culture Techniques; Cultured Cells; Cystic Fibrosis; Cystic Fibrosis Transmembrane Conductance Regulator; DNA; Data; Diagnosis; Disease; Dissection; Environment; Epithelial Cells; Family; Gene Expression; Genes; Genetic; Genetic Risk; Genetic Transcription; Genome; Genomics; Genotype; Goals; Hereditary Disease; Heritability; Homozygote; Human; In Vitro; Individual; Joints; Lead; Life; Lung; Lung diseases; Lymphocyte; Maps; Modeling; Molecular; Molecular Profiling; Morbidity - disease rate; Mutation; Nasal Epithelium; Nature; Neonatal Screening; Organ; Outcome; Outcome Study; Patients; Phenotype; Play; Population; Positioning Attribute; Pulmonary Cystic Fibrosis; RNA; Reporting; Research; Research Activity; Risk; Role; Sample Size; Sampling; Severities; Severity of illness; Structure of respiratory epithelium; Testing; Therapeutic Intervention; Time; Tissue-Specific Gene Expression; Transcript; Twin Multiple Birth; Twin Studies; Validation; Variant; base; biological research; case control; cell type; cystic fibrosis patients; design; genetic variant; genome wide association study; lymphoblastoid cell line; molecular phenotype; mortality; novel; prognostic; small hairpin RNA; trait; validation studies

DESCRIPTION (provided by applicant): Cystic fibrosis (CF) is a monogenic genetic disorder caused by mutations in CFTR, and respiratory disease is the major cause of morbidity and mortality. The median age of survival in CF is only 37 years, but there is a broad range of disease severity in the lung, even among patients with identical CFTR genotypes, including ?F508 homozygotes. Robust twin/sib studies conclude that genetic factors must play a critical role in disease severity. Two transformational studies of twins and sibs assessed environmental versus genetic influences, and both concluded that genetic factors play a major, or even majority, role in lung disease severity, and heritability estimates ranged from 0.54 to 0.89. Early candidate gene studies to identify CF modifiers were limited by small sample size and poorly defined phenotypes. These limitations have been addressed by a North American CF Genetic Consortium, which includes study groups at UNC/CWRU, Johns Hopkins, and Toronto. Genetic Modifier Consortium patients are now being tested in a whole-genome scan (Illumina 610K Quad). This RFA now provides the opportunity to study the role of gene expression variation in CF lung disease, and the integrated analysis of SNPs/CNVs and expression data. This project holds great promise for defining a robust molecular phenotype for CF lung disease, and we will be uniquely positioned to develop an integrated view of molecular mechanisms underlying CF lung disease severity. Since most CF patients are now diagnosed by neonatal screening, each CF patient could have a molecular signature, and associated risk, established early in life. Taken together, expression data and whole genome SNP data in the same CF patients are likely to spawn a variety of biological and clinical research activity in CF (and other) lung diseases, and provide unprecedented opportunities for novel prognostic and therapeutic interventions in CF. The identification of molecular mechanisms relevant to lung disease severity in CF is also likely to be relevant to more common lung diseases, such as asthma and COPD, as has already been shown for variants and differential gene expression in TGF¿1.

描述（由申请人提供）：囊性纤维化（CF）是一种由CFTR突变引起的单基因遗传性疾病，呼吸系统疾病是发病率和死亡率的主要原因。CF患者的中位生存年龄仅为37岁，但肺部疾病严重程度差异很大，即使在具有相同CFTR基因型的患者中也是如此，包括？F508该等位。强有力的双胞胎/兄弟姐妹研究得出结论，遗传因素必须在疾病严重程度中发挥关键作用。两项关于双胞胎和兄弟姐妹的转化性研究评估了环境与遗传的影响，两者都得出结论，遗传因素在肺部疾病的严重程度中起主要作用，甚至是主要作用，遗传率估计在0.54到0.89之间。早期鉴定CF修饰因子的候选基因研究受到样本量小和表型定义不清的限制。这些限制已经由北美CF遗传联盟解决，该联盟包括UNC/CWRU，约翰霍普金斯大学和多伦多的研究小组。基因修饰剂联盟的患者现在正在接受全基因组扫描（Illumina 610K Quad）的测试。该RFA现在为研究基因表达变异在CF肺病中的作用，以及snp /CNVs和表达数据的综合分析提供了机会。该项目对确定CF肺病的强大分子表型具有很大的希望，我们将独特地定位于开发CF肺病严重程度的分子机制的综合观点。由于大多数CF患者现在是通过新生儿筛查诊断的，因此每个CF患者在生命早期都可能具有分子特征和相关风险。综上所述，同一CF患者的表达数据和全基因组SNP数据可能会在CF（和其他）肺部疾病中产生各种生物学和临床研究活动，并为CF的新型预后和治疗干预提供前所未有的机会。CF中与肺部疾病严重程度相关的分子机制的鉴定也可能与更常见的肺部疾病相关，如哮喘和COPD。正如TGF¿1中的变异和差异基因表达所显示的那样。