Mechanisms of replication stress-induced chromosome fragility
复制应激诱导染色体脆性的机制
基本信息
- 批准号:9193425
- 负责人:
- 金额:$ 32.4万
- 依托单位:
- 依托单位国家:美国
- 项目类别:
- 财政年份:2016
- 资助国家:美国
- 起止时间:2016-09-02 至 2021-08-31
- 项目状态:已结题
- 来源:
- 关键词:AddressAphidicolinAutistic DisorderBioinformaticsCancer BiologyCell Culture TechniquesCellsChromosome BreakageChromosome Fragile SitesChromosome FragilityChromosomesComplexConflict (Psychology)DNADNA Double Strand BreakDNA Polymerase InhibitorDNA biosynthesisDNA replication forkDNA strand breakDNA-Directed DNA PolymeraseDNA-Directed RNA PolymeraseDataDetectionDevelopmentDiseaseDoctor of PhilosophyDrug usageFellowship ProgramFrequenciesFutureGene ExpressionGene Expression ProfileGenesGeneticGenetic RecombinationGenetic TranscriptionGenomeGenome StabilityGenomic InstabilityGenomicsGleanHot SpotHumanHuman Cell LineHuman GenomeHybridsIronJuvenile Parkinson DiseaseKnowledgeLearningLinkLocationMalignant NeoplasmsMammalian CellMapsMedicalMethodsModelingMolecular BiologyMonitorNucleotidesOncogenesOpen Reading FramesPatternPersonsPharmaceutical PreparationsPlasmidsPositioning AttributeProcessProductionRNARecruitment ActivityRecurrenceRegulonResearchResearch ProposalsResearch SupportResolutionRibonucleotide Reductase InhibitorRiskSaccharomyces cerevisiaeSiteSpecialistSpecificitySpeedStressStructureSystemTestingTissuesTrainingTumor Suppressor ProteinsUniversitiesUrsidae FamilyWorkYeast Model SystemYeastsbasecancer typecell typeexperiencegene inductiongenome-widehuman diseasehydroxyureainhibitor/antagonistinsightlymphoblastmutantnervous system disordernext generation sequencingnucleasepre-doctoralprogramspromoterresearch studyskillssummer researchtoolyeast genetics
项目摘要
PROJECT SUMMARY/ABSTRACT
In this research proposal we aim to address the question how DNA replication stress causes
chromosome fragility, which is one of the underlying mechanisms of genome instability and cancer
development. Chromosome fragile sites are effectively preferred sites of DNA double strand breaks inducible
upon replication stress, and are an intrinsic and vulnerable feature of our genome. Yet, the locations of the
majority of these break sites still remain unknown due to the shortage of suitable genome scale detection
methods. Moreover, it is also a long-standing question why different replication inhibitors as well as different
cell types produce distinct spectra of breakage formation. We hypothesize that replication inhibitors
simultaneously destabilize replication forks and elicit unique patterns of gene expression, thus causing
unscheduled clash between replication and transcription and ultimately DNA strand breaks. We propose to
test this hypothesis by using a combination of approaches in a yeast model and in human cell lines. We will
first take advantage of the genetically amenable yeast model to directly test our core hypothesis. We will learn
how the interplay between replication and transcription dynamics impacts DSB formation and genome stability.
We will then systematically map drug-specific CFS formation in both yeast and human genomes. These
experiments will enable the identification of genomic features associated with DSBs and potentially disease-
associated genes such as tumor suppressors. We will also use an established recombination system in the
yeast model to test the functionality of the genomic features associated with DNA breaks. Our research will fill
the gap in our knowledge of the locations of chromosome fragile sites, enable the discovery of new cancer-
associated genes and provide insights into the mechanisms of genome instability.
The proposed project encompasses molecular biology, yeast genetics, mammalian cell culture,
genomics and bioinformatics. The research team led by Dr. Wenyi Feng includes one predoctoral trainee
(second year in a Ph.D. program) and two to three undergraduate trainees (through the summer research
fellowship program provided by Upstate Medical University and a credited one to two semester research
course provided by Syracuse University), one research support specialist, and one future recruit of a
postdoctoral trainee. The predoctoral trainee is at entry level to yeast genetics and mammalian cell culture
manipulations and is expected to complete training within the duration of this project. Training for the
undergraduates who typically have minimal experimental skills is expected to last one to two years per trainee.
Finally, the postdoctoral trainee to be recruited is expected to have experience in mammalian cell culture
and/or next-generation sequencing and is also expected to complete training within the duration of this project.
项目总结/文摘
项目成果
期刊论文数量(0)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
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WENYI FENG其他文献
WENYI FENG的其他文献
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{{ truncateString('WENYI FENG', 18)}}的其他基金
Understanding the Genome Maintenance Function of the Fragile X Protein (FMRP)
了解脆性 X 蛋白 (FMRP) 的基因组维持功能
- 批准号:
10511129 - 财政年份:2022
- 资助金额:
$ 32.4万 - 项目类别:
Understanding the Genome Maintenance Function of the Fragile X Protein (FMRP)
了解脆性 X 蛋白 (FMRP) 的基因组维持功能
- 批准号:
10661830 - 财政年份:2022
- 资助金额:
$ 32.4万 - 项目类别:
Single Stranded DNA: The Genome's Achilles Heel
单链 DNA:基因组的致命弱点
- 批准号:
7882988 - 财政年份:2009
- 资助金额:
$ 32.4万 - 项目类别:
Single Stranded DNA: The Genome's Achilles Heel
单链 DNA:基因组的致命弱点
- 批准号:
8392278 - 财政年份:2007
- 资助金额:
$ 32.4万 - 项目类别:
Single Stranded DNA: The Genome's Achilles Heel
单链 DNA:基因组的致命弱点
- 批准号:
7477136 - 财政年份:2007
- 资助金额:
$ 32.4万 - 项目类别:
Single Stranded DNA: The Genome's Achilles Heel
单链 DNA:基因组的致命弱点
- 批准号:
8188793 - 财政年份:2007
- 资助金额:
$ 32.4万 - 项目类别:
Single Stranded DNA: The Genome's Achilles Heel
单链 DNA:基因组的致命弱点
- 批准号:
7299315 - 财政年份:2007
- 资助金额:
$ 32.4万 - 项目类别:
Single Stranded DNA: The Genome's Achilles Heel
单链 DNA:基因组的致命弱点
- 批准号:
8204426 - 财政年份:2007
- 资助金额:
$ 32.4万 - 项目类别:
Investigating of a Novel Checkpoint in S. Cerevisiae
酿酒酵母新检查点的研究
- 批准号:
6920712 - 财政年份:2003
- 资助金额:
$ 32.4万 - 项目类别:
Investigating of a Novel Checkpoint in S. Cerevisiae
酿酒酵母新检查点的研究
- 批准号:
6778266 - 财政年份:2003
- 资助金额:
$ 32.4万 - 项目类别:
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