RatMap--rat genome tools and data.

RatMap--rat genome tools and data.
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DOI:
10.1093/nar/gki125
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发表时间:
2005-01-01
影响因子:
14.9
通讯作者:
Ståhl F
Ståhl F
中科院分区:
生物学2区
文献类型:
--
作者:
Petersen G;Johnson P;Andersson L;Klinga-Levan K;Gómez-Fabre PM;Ståhl F

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自1994年以来,大鼠基因组数据库RatMap(http:ratmap.org或http://ratmap.gen.gu.se)一直是大鼠基因组信息的主要资源之一。该数据库由瑞典哥德堡大学的CMB遗传学维护,提供有关大鼠基因、多态性大鼠DNA标记和大鼠数量性状基因座(QTL)的信息,所有这些信息都在RatMap中管理。该数据库是在大鼠基因和命名委员会(RGNC)的监督下,因此对大鼠基因命名给予了很大的关注。RatMap提供了关于大鼠个体基因组图、核型的信息,并提供了大鼠基因组序列和综合大鼠连锁图谱的统一展示。一套工具也可用于促进大鼠QTL的鉴定和表征,以及估计单个大鼠基因中外显子/内含子的数量和大小。此外,还提供了大鼠与小鼠和人的比较基因图谱。
The rat genome database RatMap (http://ratmap.org or http://ratmap.gen.gu.se) has been one of the main resources for rat genome information since 1994. The database is maintained by CMB–Genetics at Göteborg University in Sweden and provides information on rat genes, polymorphic rat DNA-markers and rat quantitative trait loci (QTLs), all curated at RatMap. The database is under the supervision of the Rat Gene and Nomenclature Committee (RGNC); thus much attention is paid to rat gene nomenclature. RatMap presents information on rat idiograms, karyotypes and provides a unified presentation of the rat genome sequence and integrated rat linkage maps. A set of tools is also available to facilitate the identification and characterization of rat QTLs, as well as the estimation of exon/intron number and sizes in individual rat genes. Furthermore, comparative gene maps of rat in regard to mouse and human are provided.
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