Investigation of the Stabilizing Mechanism of Collagen
Investigation of the Stabilizing Mechanism of Collagen
批准号:
16390016
负责人:
KOBAYASHI Yuji
金额:
$6.08万
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (B)
财政年份:
2004
资助国家:
日本
项目状态:
已结题
起止时间:
2004 至 2005
中文摘要
已知Hyp^R残基有助于胶原三螺旋结构的热稳定性。我们从热力学的角度研究了一系列三肽(X-Y-Gly)_n[X,Y:Pro,Hyp^R,or 4-F-Proline(FPro)]对胶原蛋白三螺旋结构的稳定机理。差示扫描量热法测定的从三螺旋向单螺旋转变的热力学参数表明,(Pro-Hyp^R-Gly)_<;10>;10>;的稳定性增强主要是由焓项引起的,而(Pro-fPro^R-Gly)_<;10>;和(fPro^S-Pro-Gly)_<;我们通过比较溶液中观察到的分子体积和晶体结构中的固有分子体积,证明了这种差异是由于这些多肽在溶液中的水化程度不同造成的,另一方面,我们还发现了…此外,X位上的Hyp^R残基降低了三螺旋的稳定性。为了解决Hyp^R的这种效应,我们合成并表征了(Hyp^R-Hyp^R-Gly)_<;10>;我们已经报道了它需要一个热稳定的三螺旋,然而,它的稳定机制还没有解决。这里我们测定了(Hyp^R-Hyp^R-Gly)_<;10>;的全长晶体结构。为了证实这一精确的结构信息,我们估计了三螺旋和单螺旋状态下的水合程度。结果表明,(Hyp^R-Hyp^R-Gly)和(Pro-Hyp^R-Gly)10>;在三螺旋状态下的水化程度与(Pro-Hyp^R-Gly)_10>;相当,但前者在单螺旋状态下的水化程度比(Pro-Hyp^R-Gly)_10>;高。由于水合作用降低了由于与水分子形成氢键而产生的热焓,减小了由于多肽分子周围水分子的限制而产生的熵,因此我们推断(Hyp^R-Hyp^R-Gly)_<;10>;的高热稳定性归因于它在单卷曲状态下的高水合程度。较少
英文摘要
It has been known that Hyp^R residue contributes to the thermal stability of the collagen triple helical structure. We have performed intensive studies to investigate the stabilizing mechanism of the collagen triple helical structure using a series of polytripeptides (X-Y-Gly)_n [X, Y : Pro, Hyp^R, or 4-fluoroproline (fPro)] from the thermodynamic point of view. The thermodynamic parameters with the transition from the triple-helix to the single-coil determined by DSC analyses indicated that the enhanced stabilities are classified into two different types : the enthalpy term is primarily responsible for increased stability of (Pro-Hyp^R-Gly)_<10>, whereas the entropy term dominates the enhanced stabilities of (Pro-fPro^R-Gly)_<10> and (fPro^s-Pro-Gly)_<10>. We showed that this difference comes from the difference of hydration on these peptides by the comparison of molecular volumes observed in solution with intrinsic ones from the crystal structure.On the other hand, it has been shown … More that Hyp^R residue at the X position decreases the stability of the triple helix. To address this effect of Hyp^R, we have synthesized and characterized (Hyp^R-Hyp^R-Gly)_<10>. We have already reported that it takes a thermally stable triple helix, however, its stabilizing mechanism has not been solved. Here we determined the full-length crystal structure of (Hyp^R-Hyp^R-Gly)_<10>. To corroborate this precise structural information, we estimated the degrees of hydration in both the triple-helix and the single-coil states. The results showed that the degree of hydration of (Hyp^R-Hyp^R-Gly)_<10> is comparable to that of (Pro-Hyp^R-Gly)_<10> in the triple-helix state, but the former was more highly hydrated than (Pro-Hyp^R-Gly)_<10> in the single-coil state. Because hydration reduces the enthalpy due to the formation of hydrogen bond with water molecule and diminishes the entropy due to the restriction of water molecules surrounding a peptide molecule, we deduced that the high thermal stability of (Hyp^R-Hyp^R-Gly)_<10> is attributed to its high degree of hydration in the single-coil state. Less
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DOI:
10.1016/j.jmb.2004.10.011
发表时间:
2004-12-10
期刊:
JOURNAL OF MOLECULAR BIOLOGY
影响因子:
5.6
作者:
[Nishimura, M, Yoshida, T, Kobayashi, Y]
通讯作者:
Kobayashi, Y
DOI:
--
发表时间:
2006
期刊:
J. Pept. Sci. 12
影响因子:
--
作者:
[宮田 興子, 白井 淳, 吉野 新太郎, 中林 俊樹, 武田 良文, 内藤 猛章, Kiyoshi Ogawa et al.]
通讯作者:
Kiyoshi Ogawa et al.
High-resolution X-ray structure of the unexpectedly stable dimer of the [Lys(-2)-Arg(-1)-des(17-21)]endothelin-1 peptide.
[Lys(-2)-Arg(-1)-des(17-21)]endothelin-1 肽出乎意料稳定的二聚体的高分辨率 X 射线结构。
DOI:
10.1021/bi049098a
发表时间:
2004
期刊:
Biochemistry
影响因子:
2.9
作者:
[F. Hoh, R. Cerdan, Q. Kaas, Y. Nishi, L. Chiche, S. Kubo, N. Chino, Yuji Kobayashi, C. Dumas, A. Aumelas]
通讯作者:
A. Aumelas
Different Effects of 4-Hydroxyproline and 4-Fluoroproine on the Stability of Collagen Triple Helix
4-羟脯氨酸和4-氟脯氨酸对胶原三螺旋稳定性的不同影响
DOI:
--
发表时间:
2005
期刊:
Biochemistry (in press)
影响因子:
--
作者:
[Nishi, Y. et al.]
通讯作者:
Y. et al.
Complete thermal-unfolding profiles of oxidized and reduced cytochromes c
氧化和还原细胞色素 c 的完整热解折叠谱
DOI:
--
发表时间:
2004
期刊:
J.Am.Chem.Soc. 126
影响因子:
--
作者:
[S.J.Takayama, S.Mikami, N.Terui, H.Mita, J.Hasegawa, Y.Sambongi, Y.Yamamoto, K.Oikawa, S.Nagao, S.J.Takayama, S.Uchiyama]
通讯作者:
S.Uchiyama
共 26 条
Research on How to Understand and Share the Risk of Natural Disasters Focusing on Children, in the Home, School and Community
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批准号:25420638
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项目类别:Grant-in-Aid for Scientific Research (C)
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资助金额:$3.24万
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财政年份:2013
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负责人:KOBAYASHI Yuji
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依托单位:
A unified theory of Grobner bases and an application to syzygies of modules
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批准号:21540048
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项目类别:Grant-in-Aid for Scientific Research (C)
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资助金额:$1.16万
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财政年份:2009
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负责人:KOBAYASHI Yuji
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依托单位:
Research and development of drugs of prevention and treatment for complication of diabetes targeting the receptor of advanced glycation end products(RAGE)
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批准号:21390013
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项目类别:Grant-in-Aid for Scientific Research (B)
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资助金额:$12.31万
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财政年份:2009
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负责人:KOBAYASHI Yuji
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Comprehensive Green Environmental Evaluation by Various Functions of Green Tract of Land
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批准号:19760429
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项目类别:Grant-in-Aid for Young Scientists (B)
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资助金额:$2.36万
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财政年份:2007
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负责人:KOBAYASHI Yuji
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依托单位:
Rewriting systems (Groebner bases) on algebraic systems and their application
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批准号:17540042
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项目类别:Grant-in-Aid for Scientific Research (C)
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资助金额:$1.06万
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财政年份:2005
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负责人:KOBAYASHI Yuji
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Groebner bases for algebraic systems and homology, homotopy
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批准号:14540046
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项目类别:Grant-in-Aid for Scientific Research (C)
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资助金额:$1.15万
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财政年份:2002
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负责人:KOBAYASHI Yuji
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依托单位:
The development of NMR methods for drug discovery targeting on ribosome recycling.
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批准号:14370756
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项目类别:Grant-in-Aid for Scientific Research (B)
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资助金额:$8.13万
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财政年份:2002
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负责人:KOBAYASHI Yuji
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依托单位:
Structural analysis of BMP and BMP receptor
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批准号:11470475
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项目类别:Grant-in-Aid for Scientific Research (B).
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资助金额:$8.26万
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财政年份:1999
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负责人:KOBAYASHI Yuji
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依托单位:
Thermodynamic Analysis of Protein-Ligand interactions
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批准号:10557216
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项目类别:Grant-in-Aid for Scientific Research (B)
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资助金额:$5.12万
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财政年份:1998
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负责人:KOBAYASHI Yuji
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依托单位:
Study of biomolecular complex formation by heteronuclear multidimensional NMR
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批准号:09307054
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项目类别:Grant-in-Aid for Scientific Research (A)
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资助金额:$15.87万
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财政年份:1997
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负责人:KOBAYASHI Yuji
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依托单位:
Study of the word problem for algebraic systems by means of rewriting
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批准号:08640065
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项目类别:Grant-in-Aid for Scientific Research (C)
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资助金额:$0.83万
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财政年份:1996
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负责人:KOBAYASHI Yuji
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依托单位:
海外基金