The sequence read archive.
The sequence read archive.
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DOI：
10.1093/nar/gkq1019
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发表时间：
2011-01
影响因子：
14.9
通讯作者：
International Nucleotide Sequence Database Collaboration
中科院分区：
文献类型：
--
作者：
Leinonen R;Sugawara H;Shumway M;International Nucleotide Sequence Database Collaboration
测序成本的显著降低和测序速度的提高使得提交到主要下一代序列数据存档（sequence Read archive， SRA）的数据呈爆炸式增长。实验数据的保存是科学记录的重要组成部分，越来越多的期刊和资助机构要求下一代序列数据存入SRA。SRA是作为下一代序列数据的公共存储库而建立的，由国际核苷酸序列数据库协作组织（INSDC）运营。INSDC的合作伙伴包括国家生物技术信息中心（NCBI）、欧洲生物信息研究所（EBI）和日本DNA数据库（DDBJ）。SRA可从NCBI访问http://www.ncbi.nlm.nih.gov/Traces/sra，从EBI访问http://www.ebi.ac.uk/ena，从DDBJ访问http://trace.ddbj.nig.ac.jp。在本文中，我们介绍了SRA的内容和结构，详细介绍了我们对测序平台的支持，并提供了推荐的数据提交级别和格式。我们还简要概述了我们对数据增长挑战的回应。
The combination of significantly lower cost and increased speed of sequencing has resulted in an explosive growth of data submitted into the primary next-generation sequence data archive, the Sequence Read Archive (SRA). The preservation of experimental data is an important part of the scientific record, and increasing numbers of journals and funding agencies require that next-generation sequence data are deposited into the SRA. The SRA was established as a public repository for the next-generation sequence data and is operated by the International Nucleotide Sequence Database Collaboration (INSDC). INSDC partners include the National Center for Biotechnology Information (NCBI), the European Bioinformatics Institute (EBI) and the DNA Data Bank of Japan (DDBJ). The SRA is accessible at http://www.ncbi.nlm.nih.gov/Traces/sra from NCBI, at http://www.ebi.ac.uk/ena from EBI and at http://trace.ddbj.nig.ac.jp from DDBJ. In this article, we present the content and structure of the SRA, detail our support for sequencing platforms and provide recommended data submission levels and formats. We also briefly outline our response to the challenge of data growth.
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影响因子：
14.9
作者：
Kaminuma E;Mashima J;Kodama Y;Gojobori T;Ogasawara O;Okubo K;Takagi T;Nakamura Y
通讯作者：
Nakamura Y
影响因子：
14.9
作者：
Leinonen R;Akhtar R;Birney E;Bonfield J;Bower L;Corbett M;Cheng Y;Demiralp F;Faruque N;Goodgame N;Gibson R;Hoad G;Hunter C;Jang M;Leonard S;Lin Q;Lopez R;Maguire M;McWilliam H;Plaister S;Radhakrishnan R;Sobhany S;Slater G;Ten Hoopen P;Valentin F;Vaughan R;Zalunin V;Zerbino D;Cochrane G
通讯作者：
Cochrane G
影响因子：
14.9
作者：
Cock PJ;Fields CJ;Goto N;Heuer ML;Rice PM
通讯作者：
Rice PM
影响因子：
5.8
作者：
Bonfield, JK;Staden, R
通讯作者：
Staden, R
影响因子：
14.9
作者：
Shumway M;Cochrane G;Sugawara H
通讯作者：
Sugawara H