Collaborative Proposal: ABI Innovation: Model-data synthesis and forecasting across the upper Midwest: Partitioning uncertainty and environmental heterogeneity in ecosystem carbon

伊利诺伊大学厄巴纳-香槟分校和威斯康星州-麦迪逊大学被授予合作赠款，以开发一个被称为预测生态系统分析仪（PEcAn）的综合生态生物信息学工具箱，该工具箱包括：1）管理大量公开环境数据的科学工作流程系统; 2）贝叶斯数据同化系统，在国家范围内综合这些信息。艺术生态系统模型这个项目的动机是，许多关于全球变化的最紧迫的问题不一定受到收集新数据的需要的限制，而是受到我们综合现有数据的能力的限制。该项目旨在通过开发一个以合理的方式集成多个数据源的框架来提高这种能力。PEcAn最初是围绕生态系统人口模型（艾德）开发的，这是少数几个能够在不同的空间和时间尺度上整合大量观测数据的陆地生物圈模型之一，但其设计目的是与广泛的生态系统模型相结合。数据同化系统的产出将是根据现有最佳数据对陆地碳循环和植物生物多样性作出的区域尺度高分辨率估计，并对所涉及的不确定性作出强有力的说明。 工作流系统将使生态系统建模在应用于数据的操作方面更具可复制性，自动化和透明性，从而最终更容易为同行和公众所理解。 它将减少建模组之间的冗余工作，促进协作，并使模型更容易被研究社区的其他成员访问。作为开发和应用这些生态生物信息学工具的试验台，该项目将侧重于北方威斯康星州的温带/北方过渡带，该地区预计将显示出对气候变化的巨大反应，可以说是该国数据最丰富的地区。这里开发的工具将使我们能够划分碳通量和池的空间和时间的变化，并归因于特定的生物和非生物驱动程序的区域规模的反应。数据同化框架将划分不同的不确定性来源，这将使我们能够更好地了解哪些因素限制了我们的推断，并将不确定性更完整地传播到模型预测中。艾德然后将用于预测十年至百年尺度气候变化情景下的区域尺度动态。 这种方法将使我们能够第一次评估我们对生态系统当前状态的不确定性对我们预测未来的能力有多大影响。本项目开发的工具不仅将在生态界得到广泛使用，而且还将直接关系到有关减缓气候变化和碳信用市场的重要政策和管理辩论。具体来说，它将允许基于对最佳可用数据的广泛综合，对碳循环状态进行可重复的、科学上可辩护的和时间上最新的分析。在科学界，这些工具将广泛适用于numeous生态系统模型，并促进非建模者使用和评估预测模型。这里开发的工具也很适合于综合大量来自一些国家科学基金会支持的研究网络的信息，如LTER网络和氖。为了鼓励使用和开发，我们将在项目网站pecanproject.org上提供开源代码、文档和教程。为了进一步传播这些工具和方法，该项目还包括一个强大的教育部分，包括三个要素：1）开发一个关于生态信息学的研究生研讨会，将以面对面和在线形式提供，2）PI参与两个现有的夏季课程，其中一个是在位于我们研究区域内的部落学院提供的，以及3）直接培训直接参与该项目的学生和博士后。

The University of Illinois at Urbana-Champaign and the University of Wisconsin - Madison are awarded collaborative grants to develop an integrated ecological bioinformatics toolbox dubbed the Predictive Ecosystem Analyzer (PEcAn) which consists of: 1) a scientific workflow system to manage the immense amounts of publicly-available environmental data and 2) a Bayesian data assimilation system to synthesize this information within state-of-the-art ecosystems models. This project is motivated by the fact that many of the most pressing questions about global change are not necessarily limited by the need to collect new data as much as by our ability to synthesize existing data. This project seeks to improve this ability by developing a framework for integrating multiple data sources in a sensible manner. PEcAn is initially being developed around the Ecosystem Demography model (ED), one of the few terrestrial biosphere models capable of integrating a large suite of observational data at different spatial and temporal scales, but is designed to interface with a wide class of ecosystem models. The output of the data assimilation system will be a regional-scale high-resolution estimate of both the terrestrial carbon cycle and plant biodiversity based on the best available data and with a robust accounting of the uncertainties involved. The workflow system will allow ecosystem modeling to be more reproducible, automated, and transparent in terms of operations applied to data, and thus ultimately more comprehensible to both peers and the public. It will reduce the redundancy of effort among modeling groups, facilitate collaboration, and make models more accessible the rest of the research community. As a test bed for the development and application of these ecological bioinformatics tools, the project will focus on the temperate/boreal transition zone in northern Wisconsin, a region that is expected to show large climate change responses and is arguably the most data-rich region in the country. The tools developed here will enable us to partition carbon flux and pool variability in space and time and to attribute the regional-scale responses to specific biotic and abiotic drivers. The data-assimilation framework will partition different sources of uncertainty, which will enable a better understanding of which are limiting our inference, and provide a more complete propagation of uncertainty into model forecasts. ED will then be used to forecast regional-scale dynamics under decadal to centennial scale climate change scenarios. This approach will allow us to assess for the first time how much our uncertainty about the current state of the ecosystem impacts our ability to anticipate the future. The tools developed in this project will not only find broad use in the ecological community but will also have direct relevance to important policy and management debates about climate change mitigation and carbon credit markets. Specifically, it will allow a repeatable, scientifically defensible, and temporally up-to-date analysis of the state of the carbon cycle base on a broad synthesis of the best available data. Within the scientific community, these tools will be broadly applicable to numeous ecosystem models and facilitate the use and evaluation of predictive models by non-modelers. The tools developed here are also well-positioned to synthesize the large volumes of information coming out of a number of NSF-supported research networks, such as the LTER network and NEON. To encourage use and development, we will make open-source code, documentation, and tutorials available on the project website, pecanproject.org. To further disseminate these tools and methods, this project also has a strong education component consisting of three elements: 1) the development of a graduate seminar on eco-informatics that will be offered in both face-to-face and online formats, 2) the participation of the PIs in two existing summer courses, one of which is offered at a tribal college located within our study region, and 3) direct training of students and postdocs directly involved with the project.