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Collaborative Research: Urban Vector-Borne Disease Transmission Demands Advances in Spatiotemporal Statistical Inference

合作研究：城市媒介传播疾病传播需要时空统计推断的进步

基本信息

批准号：
1761603
负责人：
Edward Ionides
金额：
$ 69.23万
依托单位：
Regents of the University of Michigan - Ann Arbor
依托单位国家：
美国
项目类别：
Continuing Grant
财政年份：
2018
资助国家：
美国
起止时间：
2018-07-15 至 2023-06-30
项目状态：
已结题

来源：
https://www.nsf.gov/awardsearch/showAward?AWD_ID=1761603&HistoricalAwards=false
关键词：
Collaborative Research Urban Vector Borne

项目摘要

Statistical analysis of partially-observed, nonlinear, stochastic spatiotemporal systems is a methodological challenge. Many existing inference algorithms suffer from a "curse of dimensionality" that prohibits their applicability to models describing interacting dynamic processes occurring within and between many spatial locations. New algorithms will be developed, and shown in theory and in practice to advance capabilities for spatiotemporal data analysis. This methodological research will be carried out in the context of addressing a public health concern, transmission of dengue virus. Global incidence of dengue has risen 30-fold over the past fifty years, with notable geographical expansion in South and Central America. The municipality of Rio de Janeiro is a focal point for dengue transmission in this region. Spatiotemporal data on dengue cases in Rio de Janeiro will be analyzed, together with data on human movement, temperature, and rainfall. Policy decisions for the detection, control, and potential eradication of infectious diseases are informed by model-based understanding of disease transmission. Improved understanding of the spatiotemporal dynamics of disease transmission will have implications for improvements in disease control. Mathematical models will be developed to describe spatiotemporal dynamics of dengue transmission, and the novel statistical methodology will be used to link these models to the data from Rio de Janeiro.Spatiotemporal partially-observed Markov process models provide a framework for formulating and answering questions relating spatiotemporal data to an underlying stochastic dynamic process. Statistically efficient inference involves integrating out over possible values of the latent process, a task known as filtering. Except when the system is approximately linear and Gaussian, filtering spatiotemporal models is challenging. One algorithm developed in this project will address the curse of dimensionality by guiding Monte Carlo particles toward important regions in the latent variable space. Another algorithm will combine many weak, independent filters to give a global filtering solution. Disease transmission systems, which are highly nonlinear and stochastic and are imperfectly observable, will be used to motivate and demonstrate the capabilities of the new algorithms. Specifically, models will be developed for the dynamics of dengue transmission in the major metropolis of Rio de Janeiro. Spatiotemporal stochastic epidemiological models will be used to examine the role of human mobility, host immunity, and climate variability in the context of a heterogeneous socioeconomic landscape. A particular goal is to identify locations that function as sources of infection critical to disease invasion and persistence as well as those that act as sinks incapable of sustained local transmission.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

部分观测的，非线性的，随机时空系统的统计分析是一个方法上的挑战。许多现有的推理算法遭受的“维数灾难”，禁止其适用于描述发生在许多空间位置内和之间的相互作用的动态过程的模型。将开发新的算法，并在理论和实践中展示，以提高时空数据分析的能力。这一方法研究将在解决公共卫生问题，登革热病毒传播的背景下进行。在过去的50年里，登革热的全球发病率上升了30倍，在南美洲和中美洲的地理范围明显扩大。里约热内卢市是该地区登革热传播的焦点。将分析里约热内卢登革热病例的时空数据，以及人类活动、温度和降雨量的数据。传染病的检测、控制和潜在根除的政策决策是通过基于模型的疾病传播理解来提供信息的。提高对疾病传播时空动态的理解将对疾病控制的改进产生影响。将开发数学模型来描述登革热传播的时空动态，并将使用新的统计方法将这些模型与里约热内卢的数据联系起来，时空部分观测马尔可夫过程模型提供了一个框架，用于制定和回答有关时空数据与潜在随机动态过程的问题。统计上有效的推理涉及对潜在过程的可能值进行积分，这是一项称为过滤的任务。除了当系统近似线性和高斯时，过滤时空模型是具有挑战性的。在这个项目中开发的一个算法将通过引导蒙特卡罗粒子朝向潜在变量空间中的重要区域来解决维数灾难。另一种算法将组合联合收割机许多弱的、独立的滤波器以给出全局滤波解决方案。疾病传播系统，这是高度非线性和随机的，是不完全可观察的，将被用来激励和展示新算法的能力。具体而言，将为里约热内卢主要大都会的登革热传播动态开发模型。时空随机流行病学模型将被用来研究在异质社会经济景观的背景下，人类流动性，宿主免疫力和气候变异性的作用。一个特别的目标是确定的地方，作为感染源的关键疾病的入侵和持久性，以及那些作为汇不能持续的本地transmission.This奖项反映了NSF的法定使命，并已被认为是值得通过使用基金会的智力价值和更广泛的影响审查标准进行评估的支持。