RUI: Lagrangian studies of active mixing -- barriers, enhanced transport and collective behavior

RUI：主动混合的拉格朗日研究——障碍、增强的运输和集体行为

• 批准号: 1806355
• 负责人: Thomas Solomon
• 金额: $ 21.36万
• 依托单位: Bucknell University
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2018
• 资助国家: 美国
• 起止时间: 2018-07-01 至 2024-06-30
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1806355&HistoricalAwards=false
• 关键词: RUI; Lagrangian; studies; active; mixing

Non-Technical DescriptionThis project addresses the question of how fluid mixing affects processes going on in the flow. During the past decade, the principle investigator's research group has conducted experiments on the behavior of reaction fronts moving in fluid flows. Those experiments have verified a theory that predicts the existence of invisible barriers that block the motion of reaction fronts in a flow. The new experiments apply very similar theories to a seemingly very different process: the swimming of self-propelled ("active") tracers such as microscopic bacteria in a flow. The experiments investigate whether there are invisible barriers that block the motion of swimming bacteria and, if so, how these barriers affect both the individual and group behavior of the bacteria. Ultimately, these experiments may lead to a better understanding of blooms of harmful algae in the oceans that can damage marine ecosystems; "self-assembly" of novel materials; the role of microscopic flows in developing embryos; and the effects of moving populations on the spreading of a disease. All of this research is done with undergraduate students who play an active role in all aspects of the studies, including experimental design, building and testing of the apparatus, data collection and analysis, and publication and presentation of the results. These are the first real research experiences for most of these students, and play an important role in their development as scientists.Technical DescriptionMany fluid processes are heavily influenced by the manner in which tracers are mixed by flows. This project is composed of a series of experiments that study the mixing and transport of active (self-propelled) tracers in a flow. Two strains of bacteria (bacillus subtilis) are used in the experiments as the active tracers: (a) wild type bacteria, which follow a random run and tumble trajectory in the absence of a flow and chemical gradients; and (b) smooth swimming bacteria, which have been genetically mutated to eliminate their ability to change swimming directions. The flows are either laboratory scale, vortex-dominated flows or microfluidic flows on a small enough scale to track individual bacteria. The experimental results are analyzed with a theory proposed by Kevin Mitchell (University of California at Merced) that is based on "swimming invariant manifolds" that act as one-way barriers to the motion of the swimmers. This theory is similar to a theory of "burning invariant manifolds" for reaction fronts that has been verified experimentally by the principle investigator and his students to predict and explain one-way barriers that block reaction front propagation. The research project addresses the following issues: (a) the existence and topology of one-way barriers that restrict the motion of active tracers in a flow; (b) the effects of nutrient gradients (chemotaxis) in the flow on these barriers; (c) enhanced long-range transport of active tracers due to a combination of swimming and fluid advection; and (d) the effects of mixing and transport on collective behavior of the organisms.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

非技术描述本项目解决了流体混合如何影响流动过程的问题。在过去的十年中，首席研究员的研究小组对流体流动中反应锋的行为进行了实验。这些实验证实了一个理论，该理论预测，在流动中，存在着阻挡反应锋面运动的无形障碍。新的实验将非常相似的理论应用于一个看似非常不同的过程：自我推进的（“活跃的”）示踪剂（如流动中的微小细菌）的游动。这些实验调查了是否存在无形的屏障阻碍了游动细菌的运动，如果存在，这些屏障如何影响细菌的个体和群体行为。最终，这些实验可能会让我们更好地了解海洋中有害藻类的大量繁殖，这些藻类会破坏海洋生态系统；新材料的“自组装”；微流体在胚胎发育中的作用；以及人口流动对疾病传播的影响。所有这些研究都是由本科生完成的，他们在研究的各个方面都发挥着积极的作用，包括实验设计，设备的构建和测试，数据的收集和分析，以及结果的发表和展示。对于大多数学生来说，这是他们第一次真正的研究经历，对他们作为科学家的发展起着重要的作用。技术描述许多流体过程受到示踪剂随流体混合的方式的严重影响。该项目由一系列实验组成，研究流动中主动（自行）示踪剂的混合和传输。实验中使用两种细菌（枯草芽孢杆菌）作为活性示踪剂：(a)野生型细菌，在没有流动和化学梯度的情况下遵循随机奔跑和翻滚轨迹；(b)游水顺畅的细菌，这些细菌经过基因突变，失去了改变游泳方向的能力。这些流动要么是实验室规模的，要么是涡流主导的流动，要么是小到足以追踪单个细菌的微流体流动。实验结果用Kevin Mitchell（加州大学默塞德分校）提出的理论进行了分析，该理论基于“游泳不变量流形”，该流形作为游泳者运动的单向障碍。该理论类似于反应锋面的“燃烧不变流形”理论，该理论已被主要研究者及其学生通过实验验证，用于预测和解释阻碍反应锋面传播的单向障碍。该研究项目解决了以下问题：(a)限制流动中活性示踪剂运动的单向屏障的存在和拓扑结构；(b)水流中的养分梯度（趋化性）对这些屏障的影响；(c)由于游泳和流体平流的结合，活性示踪剂的远距离运输增强；(d)混合和运输对生物体集体行为的影响。该奖项反映了美国国家科学基金会的法定使命，并通过使用基金会的知识价值和更广泛的影响审查标准进行评估，被认为值得支持。

项目成果

Noise-Induced Aggregation of Swimmers in the Kolmogorov Flow

科尔莫哥洛夫流中噪声引起的游泳者聚集

• DOI: 10.3389/fphy.2021.816663
• 发表时间: 2022
• 期刊: Frontiers in Physics
• 影响因子: 3.1
• 作者: Berman, Simon A.;Ferguson, Kyle S.;Bizzak, Nathaniel;Solomon, Thomas H.;Mitchell, Kevin A.
• 通讯作者: Mitchell, Kevin A.

Transport barriers to self-propelled particles in fluid flows

• DOI: 10.1103/physrevfluids.6.l012501
• 发表时间: 2021-01-14
• 期刊: PHYSICAL REVIEW FLUIDS
• 影响因子: 2.7
• 作者: Berman, Simon A.;Buggeln, John;Solomon, Thomas H.
• 通讯作者: Solomon, Thomas H.

Barriers Impeding Active Mixing of Swimming Microbes in a Hyperbolic Flow

阻碍双曲线流中游动微生物主动混合的障碍

• DOI: 10.3389/fphy.2022.861616
• 发表时间: 2022
• 期刊: Frontiers in Physics
• 影响因子: 3.1
• 作者: Yoest, Helena;Buggeln, John;Doan, Minh;Johnson, Payton;Berman, Simon A.;Mitchell, Kevin A.;Solomon, Thomas H.
• 通讯作者: Solomon, Thomas H.