BMI Bioinformatics Training Grant

BMI 生物信息学培训补助金

基本信息

项目摘要

ABSTRACT The UCSF Graduate Program in Bioinformatics is seeking continuation of its training program in Bioinformatics and Computational Biology. The program focuses on training young scientists who will serve as leaders in re- search at the interface between computation and biology. The training plan for coursework, enrichment activi- ties, and research reflects the fundamentally collaborative culture at UCSF. Thus, both the formal and informal features of the program have been designed to bring together students from different disciplines and train them for team-based problem solving. Although the focus is on computational research, all students are exposed to experimental biology in many aspects of their training including research rotations and research-based coursework. As a result, our graduates understand the sources of their data as well as how to manipulate it and are prepared to interact in multidisciplinary teams that require an understanding of both "wet" and "dry" scientific cultures. Our program has dramatically expanded our outreach efforts to recruit a diverse and talent- ed group of students with computational and quantitative backgrounds, and have developed initiatives to foster a healthy community of inclusion and respect for students across all races, religions, countries of origin, sexual orientations, genders, and ethnicities. We stand with all students, and train them to tackle challenging prob- lems in biology at scales that span the molecular to the phenotypic. The hallmarks of our program include: ● Collaborative and inter-disciplinary research. Training faculty are heavily involved in collaborative research, both within and outside of UCSF. Many of their labs (and trainees) are involved in Consortia or Centers created to address problems that cannot be solved from a single viewpoint but require contributions from many disciplines. Student publications reflect this culture. ● An innovative and evolving curriculum. Our core values of collaboration and interdisciplinary research are instilled from day one in “Bootcamp”, and continue in well-tested and new intensive project-based core courses designed to establish a common knowledge and language, and to foster team skills. A modular panel of “selectives” addresses important knowledge gaps in statistics and computer/data science, inherent in the diverse scientific backgrounds of our students. Current and new `mini courses' facilitate deep explo- ration of research topics in small groups with faculty experts, and allow the curriculum to adjust to current scientific developments, and in response to student and alumni feedback and program assessment. ● Intensive training in communication, and preparation for diverse careers. We emphasize training in key competencies needed in diverse careers in academia, industry, or the public sector, including oral and writ- ten presentation, communication, and teamwork skills. Students can participate in career preparation work- shops and internships, and many take on leadership roles in outreach and teaching. Our alumni include leaders in both academia and industry, including several who have started successful companies.
摘要 加州大学旧金山分校生物信息学研究生课程正在寻求其在生物信息学培训计划的延续 和计算生物学该计划的重点是培养青年科学家谁将担任领导人在重新 在计算和生物学之间的界面上进行搜索。培训计划的课程,丰富的活动, 联系,研究反映了UCSF的基本协作文化。因此,正式和非正式的 该计划的特点是将来自不同学科的学生聚集在一起,并对他们进行培训 以团队为基础解决问题。虽然重点是计算研究,所有的学生都接触到 实验生物学在他们的训练,包括研究轮换和研究为基础的许多方面 课程作业因此,我们的毕业生了解他们的数据来源以及如何操作它 并准备在需要了解“湿”和“干”的多学科团队中进行互动 科学文化。我们的计划大大扩大了我们的外联工作,以招募多元化和人才- 艾德的学生与计算和定量背景,并制定了倡议,以促进 一个包容和尊重所有种族,宗教,原籍国,性别, 取向、性别和种族。我们与所有学生站在一起,并训练他们解决具有挑战性的问题- 从分子到表型都是生物学的基本要素。我们计划的特点包括: ·合作和跨学科研究。培训教师积极参与合作研究, 无论是在加州大学旧金山分校内外他们的许多实验室(和学员)都参与了联盟或中心 建立一个解决问题,不能从单一的观点解决,但需要贡献, 许多学科。学生出版物反映了这种文化。 创新和不断发展的课程。我们的合作和跨学科研究的核心价值观是 从第一天开始就在“训练营”中灌输,并继续在经过充分测试和新的密集项目为基础的核心 课程旨在建立共同的知识和语言,并培养团队技能。模块化 “选编”小组讨论统计和计算机/数据科学方面的重要知识差距, 我们学生的不同科学背景。当前和新的“迷你课程”有助于深入探索- 在小组与教师专家的研究课题定量,并允许课程调整,以适应当前的 科学发展,并回应学生和校友的反馈和计划评估。 ●在沟通方面的强化培训,以及为不同职业做准备。我们强调关键培训 在学术界,工业或公共部门的各种职业所需的能力,包括口头和书面, 十项演讲、沟通和团队合作技能。学生可以参加职业准备工作- 商店和实习,许多人在推广和教学中发挥领导作用。我们的校友包括 学术界和工业界的领导者,包括一些成功创办公司的人。

项目成果

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Ryan D. Hernandez其他文献

Cutibacterium acnes antibiotic production shapes niche competition in the human skin microbiome
痤疮皮肤杆菌抗生素生产塑造了人类皮肤微生物组的利基竞争
  • DOI:
  • 发表时间:
    2019
  • 期刊:
  • 影响因子:
    0
  • 作者:
    Jan Claesen;Jennifer Spagnolo;Stephany Flores Ramos;Kenji L. Kurita;Allyson L. Byrd;A. Aksenov;A. Melnik;W. R. Wong;Shuo Wang;Ryan D. Hernandez;M. Donia;P. Dorrestein;H. Kong;J. Segre;Roger G. Linington;M. Fischbach;K. P. Lemon
  • 通讯作者:
    K. P. Lemon
Genomic characterization of serial-passaged Ebola virus in a boa constrictor cell line
蟒蛇细胞系中连续传代埃博拉病毒的基因组特征
  • DOI:
    10.1101/091603
  • 发表时间:
    2016
  • 期刊:
  • 影响因子:
    0
  • 作者:
    Greg Fedewa;S. Radoshitzky;Xiaoli Chi;L. Dongb;M. Spear;N. Strauli;M. Stenglein;Ryan D. Hernandez;P. Jahrling;J. Kuhn;J. Derisi
  • 通讯作者:
    J. Derisi
De novo mutations across 1,465 diverse genomes reveal novel mutational insights and reductions in the Amish founder population
1,465 个不同基因组的从头突变揭示了新的突变见解和阿米什创始人群体的减少
  • DOI:
  • 发表时间:
    2019
  • 期刊:
  • 影响因子:
    0
  • 作者:
    M. D. Kessler;Douglas P. Loesch;J. Perry;N. Heard;B. Cade;Heming Wang;M. Daya;J. Ziniti;S. Datta;J. Celedón;M. Soto;L. Avila;S. Weiss;K. Barnes;S. Redline;R. Vasan;Andrew D. Johnson;R. Mathias;Ryan D. Hernandez;James G. Wilson;D. Nickerson;G. Abecasis;S. Browning;S. Zoellner;J. O’Connell;B. Mitchell;T. O’Connor
  • 通讯作者:
    T. O’Connor
Evolutionary acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence.
从多态性和分歧模式推断出对人类候选顺式调控区域的进化作用。
  • DOI:
  • 发表时间:
    2009
  • 期刊:
  • 影响因子:
    0
  • 作者:
    D. Torgerson;A. Boyko;Ryan D. Hernandez;Amit R. Indap;Xiao;J. Thomas;White;J. Sninsky;M. Cargill;M. D. Adams;C. Bustamante;A. Clark
  • 通讯作者:
    A. Clark
Selection on Finite Sites under COmplex Demographic Events (SFS CODE)
复杂人口统计事件下有限站点的选择(SFS 代码)
  • DOI:
  • 发表时间:
    2007
  • 期刊:
  • 影响因子:
    0
  • 作者:
    Ryan D. Hernandez
  • 通讯作者:
    Ryan D. Hernandez

Ryan D. Hernandez的其他文献

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{{ truncateString('Ryan D. Hernandez', 18)}}的其他基金

Post Baccalaureate Research Opportunity To Promote Equity In Learning (PROPEL).
促进学习公平的学士学位后研究机会 (PROPEL)。
  • 批准号:
    10569475
  • 财政年份:
    2022
  • 资助金额:
    $ 58.52万
  • 项目类别:
Post Baccalaureate Research Opportunity To Promote Equity In Learning (PROPEL).
促进学习公平的学士学位后研究机会 (PROPEL)。
  • 批准号:
    10706542
  • 财政年份:
    2022
  • 资助金额:
    $ 58.52万
  • 项目类别:
Rarely Common: Uncovering the dominant role of rare variants in the genetic architecture of complex human traits.
罕见:揭示罕见变异在复杂人类特征的遗传结构中的主导作用。
  • 批准号:
    10531261
  • 财政年份:
    2021
  • 资助金额:
    $ 58.52万
  • 项目类别:
Rarely Common: Uncovering the dominant role of rare variants in the genetic architecture of complex human traits.
罕见:揭示罕见变异在复杂人类特征的遗传结构中的主导作用。
  • 批准号:
    10366074
  • 财政年份:
    2021
  • 资助金额:
    $ 58.52万
  • 项目类别:
Rarely Common: Uncovering the dominant role of rare variants in the genetic architecture of complex human traits.
罕见:揭示罕见变异在复杂人类特征的遗传结构中的主导作用。
  • 批准号:
    10219000
  • 财政年份:
    2021
  • 资助金额:
    $ 58.52万
  • 项目类别:
Powerful Simulation Tools for the Genomics Age
基因组时代的强大模拟工具
  • 批准号:
    9062479
  • 财政年份:
    2014
  • 资助金额:
    $ 58.52万
  • 项目类别:
Powerful Simulation Tools for the Genomics Age
基因组时代的强大模拟工具
  • 批准号:
    8673650
  • 财政年份:
    2014
  • 资助金额:
    $ 58.52万
  • 项目类别:
BMI Bioinformatics Training Grant
BMI 生物信息学培训补助金
  • 批准号:
    10430103
  • 财政年份:
    2003
  • 资助金额:
    $ 58.52万
  • 项目类别:
BMI Bioinformatics Training Grant
BMI 生物信息学培训补助金
  • 批准号:
    9288162
  • 财政年份:
    2003
  • 资助金额:
    $ 58.52万
  • 项目类别:
Maximizing Opportunities for Research Excellence
最大限度地提高卓越研究的机会
  • 批准号:
    8996171
  • 财政年份:
    1998
  • 资助金额:
    $ 58.52万
  • 项目类别:

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怀孕期间的非营养性甜味剂消费和儿童体重指数:产后纤维消费可以减轻潜在风险吗?
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Ribosomal DNA copy number: a novel genetic factor associated with body mass index in humans?
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Equitable Arthritis Care: Co-creating solutions to improve osteoarthritis treatment access and experiences for individuals with a body mass index (BMI) above 35 kg/m2
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Does a large body mass index require adults to use a greater proportion of their maximal capacity?
大的体重指数是否需要成年人使用更大比例的最大容量?
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日本儿童神经发育障碍的遗传风险和早期体重指数变化的相互作用
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A machine learning ultrasound beamformer based on realistic wave physics for high body mass index imaging
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    Fellowship Programs
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将医疗保健提供者的运动建议与运动动机组合相结合,对乳腺癌风险较高的女性的运动行为、生活质量和体重指数的影响:一项随机对照试验
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A machine learning ultrasound beamformer based on realistic wave physics for high body mass index imaging
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