Deciphering the complex mechanisms that reprogram gene expression and promote Epstein Barr Virus replication.

破译重新编程基因表达和促进 Epstein Barr 病毒复制的复杂机制。

• 批准号: MR/J001708/1
• 负责人: Alison Sinclair
• 金额: $ 49.18万
• 依托单位: University of Sussex
• 依托单位国家: 英国
• 项目类别: Research Grant
• 财政年份: 2012
• 资助国家: 英国
• 起止时间: 2012 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=MR%2FJ001708%2F1
• 关键词: Deciphering; complex; mechanisms; reprogram; gene

Epstein-Barr virus (EBV) is an important human pathogen associated with cancer and other diseases (nasopharyngeal carcinoma, B-cell-lymphomas, Hodgkin's disease, lymphoproliferative diseases and infectious mononucleosis). Multiplication of EBV is essential to produce the virus particles that allow EBV to infect cells and spread between individuals. Infection of antibody-producing cells in the blood with EBV results in abnormal continual growth of the cells. Most of the time the virus hides in these cells, without replicating. Recently, the replication of the virus has been linked with its ability to cause these cells to grow continuously.One viral gene has been nicknamed "The master regulator of lytic EBV replication". The gene generates a protein, known as Zta, which is required for replication of the viral genome. Zta alters the expression of viral and human genes by binding directly to DNA in the genomes. It recognises a very short region of DNA, containing only 7 DNA base-pairs - of 2041 potential combinations, there are 32 functional variations of this code and each is called a ZRE. Zta increases the expression of some genes but decreases the expression of others. The ability of Zta to increase the expression of viral genes is key to its ability to promote viral replication and the molecules that allow Zta to increase gene expression are partly understood. In contrast little is known of the mechanism of Zta causing decreased gene expression. Two cellular genes known to be down-regulated by Zta are normally required by the immune system to function, so Zta may allow EBV to avoid destruction by the immune response.Here, we aim to discover the molecular mechanisms that determine whether the expression of a gene is increased or decreased by Zta.(i) We will employ state-of-the-art techniques (ChIP-Seq) to identify binding sites for Zta in the human genome. We will also determine whether genes near the Zta binding sites have increased or decreased gene expression. We will also investigate the other proteins that bind to genes near Zta and will investigate whether the DNA at Zta-binding sites is methylated or not. We can then select representative human genes to investigate further to identify which neighbouring DNA elements cause Zta interaction with a ZRE to either increase or decrease gene expression. (ii) We will explore whether Zta-mediated increases or decreases in gene expression are influenced by the attachment of a small protein molecule (SUMO) to Zta or through Zta binding to other host proteins using a proteomics strategy. (iii) This project will identify those host genes that are regulated by Zta during viral replication and so is likely to highlight further mechanisms used to reprogram human cells for viral replication. This will increase our understanding of the basic process of EBV replication and potentially these can be explored as targets for future drug discovery.

EB病毒（Epstein-Barr virus，EBV）是一种与癌症和其它疾病（鼻咽癌、B细胞淋巴瘤、霍奇金病、淋巴组织增生性疾病和传染性单核细胞增多症）相关的重要人类病原体。EBV的增殖对于产生允许EBV感染细胞并在个体之间传播的病毒颗粒至关重要。EBV感染血液中的抗体产生细胞导致细胞的异常持续生长。大多数时候，病毒隐藏在这些细胞中，不复制。最近，病毒的复制与其引起这些细胞持续生长的能力有关，其中一个病毒基因被戏称为“裂解性EBV复制的主要调节因子”。该基因产生一种蛋白质，称为Zta，这是病毒基因组复制所必需的。Zta通过直接与基因组中的DNA结合来改变病毒和人类基因的表达。它识别一个非常短的DNA区域，仅包含7个DNA碱基对-2041个潜在组合，有32个功能变异，每个都被称为ZRE。Zta增加了一些基因的表达，但减少了其他基因的表达。Zta增加病毒基因表达的能力是其促进病毒复制能力的关键，并且允许Zta增加基因表达的分子部分被理解。相反，很少有人知道Zta的机制，导致基因表达下降。已知被Zta下调的两个细胞基因通常是免疫系统发挥功能所必需的，因此Zta可能允许EBV避免被免疫应答破坏。在这里，我们的目标是发现决定Zta是否增加或减少基因表达的分子机制。(i)我们将采用最先进的技术（ChIP-Seq）来识别人类基因组中Zta的结合位点。我们还将确定Zta结合位点附近的基因是否增加或减少基因表达。我们还将研究与Zta附近基因结合的其他蛋白质，并研究Zta结合位点的DNA是否甲基化。然后，我们可以选择代表性的人类基因进行进一步研究，以确定哪些相邻的DNA元件导致Zta与ZRE相互作用，以增加或减少基因表达。(ii)我们将探讨Zta介导的基因表达的增加或减少是否受到小蛋白分子（SUMO）与Zta的连接或通过Zta与其他宿主蛋白质结合的影响。(iii)该项目将确定在病毒复制过程中受Zta调控的宿主基因，因此可能会突出用于重新编程人类细胞进行病毒复制的进一步机制。这将增加我们对EBV复制基本过程的理解，并有可能将其作为未来药物发现的目标进行探索。

项目成果

Epigenetic control of Epstein-Barr virus transcription - relevance to viral life cycle?

• DOI: 10.3389/fgene.2013.00161
• 发表时间: 2013
• 期刊: Frontiers in genetics
• 影响因子: 3.7
• 作者: Sinclair AJ

Mechanism of activation of the BNLF2a immune evasion gene of Epstein-Barr virus by Zta.

• DOI: 10.1099/jgv.0.001056
• 发表时间: 2018-06
• 期刊: The Journal of general virology
• 作者: Almohammed R;Osborn K;Ramasubramanyan S;Perez-Fernandez IBN;Godfrey A;Mancini EJ;Sinclair AJ
• 通讯作者: Sinclair AJ

Identification of Epstein-Barr Virus Replication Proteins in Burkitt's Lymphoma Cells.

• DOI: 10.3390/pathogens4040739
• 发表时间: 2015-10-29
• 期刊: Pathogens (Basel, Switzerland)
• 作者: Traylen C;Ramasubramanyan S;Zuo J;Rowe M;Almohammad R;Heesom K;Sweet SM;Matthews DA;Sinclair AJ
• 通讯作者: Sinclair AJ

The Use of Chromatin Precipitation Coupled to DNA Sequencing (ChIP-Seq) for the Analysis of Zta Binding to the Human and EBV Genome.

使用染色质沉淀结合 DNA 测序 (ChIP-Seq) 分析 Zta 与人类和 EBV 基因组的结合。

• DOI: 10.1007/978-1-4939-6655-4_14
• 发表时间: 2017
• 期刊: Methods in molecular biology (Clifton, N.J.)
• 作者: Godfrey A