Leveraging comparative physiology and genomics to predict species sensitivity: A novel framework for interspecies extrapolation in ecotoxicology.

利用比较生理学和基因组学来预测物种敏感性：生态毒理学中种间外推的新框架。

• 批准号: NE/M016234/1
• 负责人: Peter Kille
• 金额: $ 41.58万
• 依托单位: CARDIFF UNIVERSITY
• 依托单位国家: 英国
• 项目类别: Research Grant
• 财政年份: 2015
• 资助国家: 英国
• 起止时间: 2015 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=NE%2FM016234%2F1
• 关键词: Leveraging; comparative; physiology; genomics; predict

The idiom of a 'miner's canary'A miner holds a canary as an alert for toxic gas; from experience he knows that the canary will stop singing before the gas causes lasting harm. The idiom of a 'miner's canary' is used throughout toxicological risk assessment, whether testing for potential risks to human health or for environmental impacts. A restricted range of organisms are used as 'canaries' or sentinels to assess the risk chemicals pose to entire ecosystems. However, unlike 'the canary and the miner' we often do not know the relative affect of the chemical on the sentinels in relation to other organisms. To account for this uncertainty in risk assessment, a 'safety factor', an arbitrary 100 or 1000-fold adjustment, is applied to the lowest observed toxicological effect on sentinel species in an attempt to protect more sensitive species. This extrapolation has no mechanistic grounding being itself entirely a pragmatic response to the number of chemicals entering the environment & variety of organisms present. In this application we propose to develop a novel framework that may be used to provide an objective measure of comparative species sensitivity. The framework is based on three components; i) the measurement of where a chemical goes when it enters an organism; ii) the specific interactions of the chemical with its biological receptor molecules & how this is affected by subtle differences in the receptors observed between species, & iii) the pathways that transmit the affect of the chemical from the interactions with receptor through to eventual impact on the organism.The where & the how muchTo calculate the amount of a chemical that resides in a target tissue we will use radio-labelled compounds & also detailed chemistry to determine the rates of chemical Accumulation (into the organism), Distribution (especially to the target site), Metabolism (to form more or less toxic metabolites) & Excretion (from the body). These measurements will allow us to determine the relative where & how much of a compound is present in response to a precise level of exposure.Pushing the first dominoMany chemicals affect a biological system through interaction with specific biomolecules termed receptors. In the same way as pushing on a single domino can lead to exotic patterns, a chemical-receptor interaction can act as a "Molecular Initiating Event" that ultimately produces a cascade of biological responses. This means that the precise characteristics of the chemical-receptor interaction are crucial to transmission of chemical affect. The structure of receptor molecules differs between species & this significantly influences the potency of the chemical to the organism. We will use genomics tools & modelling techniques developed for the pharmaceutical industry to predict the relative strength of the chemical-receptor interaction & therefore the effectiveness to transmit its affect.Mapping affect pathwaysChemical affect is transmitted from a molecular interaction with receptor(s) to the final observed biological effect through a complex series of biological pathways, now termed the Adverse Outcome Pathways (AOP). We will use computational approaches to derive the effective AOP for our chemical linking the exposure amount & its potency to transmit the biological impact.Case studies: Selecting chemicals & earthwormsWe have selected different earthworm species as sentinels because they are widely used for chemical risk assessment in soils, they are key ecosystem engineers & they show a significant diversity of sensitivity to a range of chemicals. The chemical we have selected to study: a) show significant differential sensitivity amongst earthworm species; b) represent a range of chemical modes-of-action; &, c) have receptors of varying complexities. Furthermore, the chemical classes selected have significant environmental relevance especially as this relates to 'non-target' impacts in terrestrial ecosystems.

“矿工的金丝雀”的成语矿工手持金丝雀作为有毒气体的警报；根据经验，他知道金丝雀会在毒气造成持久伤害之前停止鸣叫。“矿工的金丝雀”的习语被用于毒物风险评估，无论是测试对人类健康的潜在风险还是对环境的影响。有限范围的生物体被用作“金丝雀”或哨兵，以评估化学品对整个生态系统构成的风险。然而，与金丝雀和矿工不同的是，我们通常不知道化学物质对哨兵相对于其他生物体的相对影响。为了解决风险评估中的这种不确定性，对观察到的对哨兵物种的毒理影响最低的物种应用了“安全系数”，即任意的100倍或1000倍的调整，以试图保护更敏感的物种。这一推断没有机械基础，它本身完全是对进入环境的化学物质数量的务实反应，即存在的各种有机体。在这项申请中，我们建议开发一个新的框架，可以用来提供比较物种敏感性的客观衡量标准。该框架基于三个组成部分：i)当化学物质进入生物体时，对其去向的测量；Ii)化学物质与其生物受体分子的特定相互作用--这是如何受到物种间观察到的受体细微差异的影响，以及iii)将化学物质的影响从与受体的相互作用传递到最终对有机体的影响的途径。在哪里以及多少为了计算驻留在目标组织中的化学物质的量，我们将使用放射性标记化合物和详细的化学来确定化学积累(进入有机体)、分布(尤其是到目标部位)、新陈代谢(形成或多或少的有毒代谢物)和排泄(从身体)的速率。这些测量将使我们能够确定一种化合物的相对存在位置和多少，以对准确的暴露水平做出反应。排出第一批多米诺骨牌许多化学物质通过与称为受体的特定生物分子相互作用影响生物系统。就像推动一张多米诺骨牌会导致奇异的模式一样，化学-受体的相互作用也可以起到“分子启动事件”的作用，最终产生一连串的生物反应。这意味着化学-受体相互作用的精确特征对化学影响的传递至关重要。受体分子的结构因物种不同而不同，这极大地影响了化学物质对生物体的效力。我们将使用基因组学工具和为制药行业开发的建模技术来预测化学-受体相互作用的相对强度，从而预测其影响的有效性。映射影响途径化学影响从与受体(S)的分子相互作用传递到最终观察到的生物效应，通过一系列复杂的生物途径，现在称为不良结果途径(AOP)。我们将使用计算方法来计算我们的化学品的有效AOP，将暴露量与其传递生物影响的效力联系起来。案例研究：选择化学品和蚯蚓我们选择了不同的蚯蚓物种作为哨兵，因为它们被广泛用于土壤中的化学风险评估，他们是关键的生态工程师&他们对一系列化学品的敏感性存在显著差异。我们选择研究的化学物质：a)在蚯蚓物种之间表现出显著的差异敏感性；b)代表一系列化学作用模式；&，c)具有不同复杂程度的受体。此外，所选择的化学类别具有重大的环境相关性，特别是因为这与陆地生态系统中的“非目标”影响有关。

项目成果

The Role of Omics in the Application of Adverse Outcome Pathways for Chemical Risk Assessment.

• DOI: 10.1093/toxsci/kfx097
• 发表时间: 2017-08-01
• 期刊: Toxicological sciences : an official journal of the Society of Toxicology
• 作者: Brockmeier EK;Hodges G;Hutchinson TH;Butler E;Hecker M;Tollefsen KE;Garcia-Reyero N;Kille P;Becker D;Chipman K;Colbourne J;Collette TW;Cossins A;Cronin M;Graystock P;Gutsell S;Knapen D;Katsiadaki I;Lange A;Marshall S;Owen SF;Perkins EJ;Plaistow S;Schroeder A;Taylor D;Viant M;Ankley G;Falciani F
• 通讯作者: Falciani F

The genome sequence of the red compost earthworm, Lumbricus rubellus (Hoffmeister, 1843)

红色堆肥蚯蚓 Lumbricus rubellus 的基因组序列（Hoffmeister，1843）

• DOI: 10.12688/wellcomeopenres.19834.1
• 发表时间: 2023
• 期刊: Wellcome Open Research
• 作者: Short S

Off-Target Stoichiometric Binding Identified from Toxicogenomics Explains Why Some Species Are More Sensitive than Others to a Widely Used Neonicotinoid.

• DOI: 10.1021/acs.est.0c05125
• 发表时间: 2021-02
• 期刊: Environmental science & technology
• 影响因子: 11.4
• 作者: S. Short;A. Robinson;E. Lahive;A. Green Etxabe;Szabolcs Hernádi;M. Pereira;P. Kille;D. Spurgeon