A novel approach to study hepatitis C virus entry

研究丙型肝炎病毒进入的新方法

• 批准号: 6653801
• 负责人: ILA R SINGH
• 金额: $ 16.14万
• 依托单位: COLUMBIA UNIVERSITY HEALTH SCIENCES
• 依托单位国家: 美国
• 财政年份: 2002
• 资助国家: 美国
• 起止时间: 2002-09-01 至 2004-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/6653801
• 关键词: Vesiculovirus; flow cytometry; fusion gene; gene mutation; genetic library; genetic mapping; hepatitis C virus; nucleic acid sequence; polymerase chain reaction; tissue /cell culture; virus genetics; virus infection mechanism; virus protein

DESCRIPTION (provided by applicant): Hepatitis C virus infects 4 million Americans and an estimated 2-4% of the world's population, causing chronic hepatitis in most of those infected. A sizable fraction subsequently develops cirrhosis or hepatocellular carcinoma. This proposal describes the use of a novel approach to perform a mutational analysis of regions of the Hepatitis C virus (HCV). The objective is to delineate, at an unprecedented resolution, the role of specific sequences, both viral and cellular, in viral entry. Conventional approaches to the study of viral entry consist of morphological and biochemical studies of replication intermediates. While these approaches have been very useful for many viruses, they suffer from some drawbacks. Since viral entry is an inefficient process, with only one out of hundreds or thousands of virions following the productive pathway of infection, the non-productive particles tend to severely obscure morphological analysis and limit interpretation of biochemical studies. It also becomes difficult to get an adequate signal with physiologically relevant multiplicities of infection. This is especially pertinent to the study of the early steps of viral infection, before there is any amplification from viral expression. These problems make it necessary to complement conventional studies with the genetic approach of making and analyzing mutations that disrupt viral functions. The mutational approach is a proven and well-established strategy for the study of gene function. However, most current methods involve the isolation, storage and characterization of each mutant separately, making the process very time consuming and labor intensive. Genetic footprinting is a novel method that allows for efficient construction and parallel functional analysis of thousands of mutations in a cloned gene. The specific aims of this research are: 1) Creation of libraries of mutations in the E1 and E2 envelope glycoproteins of HCV, using a transposon-based mutagenesis method, followed by their analysis. 2) Genetic footprinting of the HCV IRES, to determine regions necessary for its function. Preliminary data showing the successful generation of libraries is presented. These libraries will be analyzed en masse to determine what regions of the glycoproteins are necessary for viral binding and fusion, and to determine what regions of the IRES are essential for translation of viral proteins. A comprehensive and detailed knowledge of the process of HCV entry gained from this study will be important for understanding the mechanism of viral infection and for the development of new preventive and therapeutic approaches against HCV.

描述（由申请人提供）：丙型肝炎病毒感染400万美国人，估计占世界人口的2-4%，在大多数感染者中引起慢性肝炎。相当一部分随后发展为肝硬化或肝细胞癌。该提案描述了使用一种新的方法来进行丙型肝炎病毒（HCV）区域的突变分析。其目标是以前所未有的分辨率描绘特定序列（病毒和细胞）在病毒进入中的作用。研究病毒进入的常规方法包括复制中间体的形态学和生物化学研究。虽然这些方法对许多病毒非常有用，但它们存在一些缺点。由于病毒进入是一个低效的过程，数百或数千个病毒体中只有一个遵循生产性感染途径，因此非生产性颗粒往往严重模糊形态学分析并限制生物化学研究的解释。也很难获得具有生理学相关的感染多重性的足够信号。这对于研究病毒感染的早期步骤尤其相关，在病毒表达有任何扩增之前。这些问题使得有必要用制造和分析破坏病毒功能的突变的遗传方法来补充常规研究。突变的方法是一个行之有效的和完善的策略，基因功能的研究。然而，目前大多数方法涉及单独分离、储存和表征每个突变体，使得该过程非常耗时且劳动密集。遗传足迹法是一种新的方法，它允许在克隆基因中高效构建和并行功能分析数千个突变。本研究的具体目的是：1）使用基于转座子的诱变方法建立HCV包膜糖蛋白E1和E2突变库，然后对其进行分析。2)HCV IRES的遗传足迹，以确定其功能所需的区域。初步数据显示成功生成的图书馆。将对这些文库进行详细分析，以确定糖蛋白的哪些区域是病毒结合和融合所必需的，并确定IRES的哪些区域是病毒蛋白翻译所必需的。从这项研究中获得的HCV进入过程的全面和详细的知识将是重要的理解病毒感染的机制和开发新的预防和治疗方法对HCV。