Repair of Genome Destabilizing DNA Structures

修复基因组不稳定的 DNA 结构

• 批准号: 7319181
• 负责人: Karen M Vasquez
• 金额: $ 30.72万
• 依托单位: UNIVERSITY OF TX MD ANDERSON CAN CTR
• 依托单位国家: 美国
• 财政年份: 2002
• 资助国家: 美国
• 起止时间: 2002-01-28 至 2012-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7319181
• 关键词: B-DNA; Binding; Biological Assay; Cell Line; Cell Survival; Cells; Chemotherapy-Oncologic Procedure; Chromosome Breakage; Chromosomes; DNA; DNA Damage; DNA Double Strand Break; DNA Fingerprinting; DNA Repair; DNA Sequence; DNA Structure; DNA biosynthesis; DNA lesion; DNA repair protein; Development; Disease; Endogenous Factors; Environment; Ficusin; Frequencies; Funding; Generations; Genes; Genetic; Genetic Transcription; Genome; Genome Stability; Genomic Instability; Goals; H-DNA; Health; Helix (Snails); Human; Human Cell Line; Lead; Lesion; Life; Lymphoma; MSH2 gene; Maintenance; Malignant Neoplasms; Mammalian Cell; Maps; Measures; Mismatch Repair; Modeling; Molecular; Mus; Mutagenesis; Mutation; Nucleotide Excision Repair; Oligonucleotides; Oncogenic; Organism; Pathogenesis; Pathologic Mutagenesis; Plasmids; Play; Prevention; Process; Proteins; Psoralens; Rate; Replication Origin; Reporter; Research Personnel; Role; SV40 T Antigens; Screening procedure; Shuttle Vectors; Signal Transduction; Simian virus 40; Site; Structure; System; Testing; Thinking; Transgenic Mice; Transgenic Organisms; Translocation Breakpoint; Work; Z-Form DNA; base; cancer cell; carcinogenesis; chemotherapy; crosslink; ear helix; endonuclease; insight; leukemia/lymphoma; molecular recognition; novel; novel strategies; prevent; programs; promoter; repaired; research study; xeroderma pigmentosum group A complementing protein

DESCRIPTION (provided by applicant): DNA damage and repair are fundamental to human health and disease. The long-term objectives of this application are to: expand our understanding of the role of DNA helical distortions in DNA damage recognition and processing; determine the factors influencing DNA structure-induced genetic instability; elucidate potential mechanisms involved in translocations associated with certain cancers; and further the development of novel approaches to reduce genetic instability in human cells. In the short term, we will pursue our recent discovery that helical distortions induced by naturally occurring Z-DNA and H-DNA structures are highly mutagenic and can induce DNA double-strand breaks (DSBs) in mammalian cells. We propose to study the effect of DNA helical distortions on genomic instability in plasmid-based systems as well as on chromosomes in human cells and in transgenic mutation-reporter mice. We will focus on the H- DNA-forming sequence located near the translocation breakpoint in the human c-MYC promoter and the Z- DNA sequence located at a chromosomal breakpoint in the human BCL-2 gene, found in lymphomas and leukemias. We will determine the role(s) of DNA repair, replication and transcription in the structure-induced genetic instability. We will use our expertise in the introduction of site-specific DNA helical distortions in the form of well-defined intermolecular triplex structures to test our hypothesis that certain types of DNA helical distortions (in the presence or absence of DNA damage per se) are recognized by the DNA repair machinery in human cells. The new information obtained from these studies will provide insight into the mechanisms of non-B DNA-induced genetic instability; the rate-limiting step in human DNA repair (i.e. distortion/damage recognition); and the overlap between nucleotide excision repair and mismatch repair in processing DNA helical distortions. It will also identify the proteins involved in the generation of DSBs induced by non- canonical DNA structures formed at sequences that map to translocation breakpoints in human cancers. These discoveries should lead to a better understanding of the pathogenesis of cancers and other diseases that are caused by DNA damage and naturally occurring helical distortions, and ultimately to the development of new approaches to treatment and prevention.

描述（由申请人提供）：DNA损伤和修复是人类健康和疾病的基础。该应用程序的长期目标是：扩大我们对DNA螺旋畸变在DNA损伤识别和处理中的作用的理解；确定影响DNA结构诱导的遗传不稳定性的因素；阐明与某些癌症相关的易位的潜在机制；并进一步发展新的方法来减少人类细胞的遗传不稳定性。在短期内，我们将继续研究我们最近的发现，即由自然发生的Z-DNA和H-DNA结构引起的螺旋扭曲具有高度诱变性，可以诱导哺乳动物细胞中的DNA双链断裂（DSBs）。我们建议研究DNA螺旋畸变对基于质粒系统的基因组不稳定性的影响，以及对人类细胞和转基因突变报告小鼠染色体的影响。我们将重点关注位于人类c-MYC启动子易位断点附近的H- DNA形成序列，以及位于人类BCL-2基因染色体断点的Z- DNA序列，这些序列在淋巴瘤和白血病中发现。我们将确定DNA修复、复制和转录在结构诱导的遗传不稳定性中的作用。我们将利用我们的专业知识，以明确定义的分子间三重结构的形式介绍特定位点的DNA螺旋扭曲，以验证我们的假设，即人类细胞中的DNA修复机制可以识别某些类型的DNA螺旋扭曲（存在或不存在DNA损伤本身）。从这些研究中获得的新信息将为非b dna诱导的遗传不稳定性的机制提供见解；人类DNA修复的限速步骤（即扭曲/损伤识别）；以及在处理DNA螺旋畸变时核苷酸切除修复和错配修复之间的重叠。它还将鉴定出在人类癌症易位断点序列上形成的非规范DNA结构诱导的dsb生成中涉及的蛋白质。这些发现将有助于更好地了解由DNA损伤和自然发生的螺旋扭曲引起的癌症和其他疾病的发病机制，并最终开发新的治疗和预防方法。