The iBAC genomic DNA expression library

iBAC 基因组 DNA 表达文库

• 批准号: BB/D012759/1
• 负责人: David Adams
• 金额: $ 18.91万
• 依托单位: Wellcome Sanger Institute
• 依托单位国家: 英国
• 项目类别: Research Grant
• 财政年份: 2006
• 资助国家: 英国
• 起止时间: 2006 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=BB%2FD012759%2F1
• 关键词: iBAC; genomic; DNA; expression; library

The recent completion of projects to obtain the complete DNA sequence of all human genes, known as the human genome, has opened up a new era of biology. We now are able to propose a whole series of experiments which would previously not have been possible. The DNA sequence of our genes confirmed that the vast majority of our DNA sequence does not provide information to make proteins, but contains regulatory information to turn genes on and off, or to turn protein production up and down, in the right cells at the right time in development. This DNA sequence, called non-coding DNA, has previously been difficult to define and hard to study. For many years it has been possible to take a gene sequence out of a chromosome and use it to make, or 'express', a protein in cultured cells grown in the laboratory. However, it has not been easy before to take a gene from a chromosome together with all of its regulatory elements. Inside cells the control of gene expression is complex and if genes are used without their natural regulatory elements it is difficult to control when they make protein and how much they make. This project will make a collection of all genes, including for the first time their regulatory sequences, in a way that they can be delivered to cells to make proteins under correct regulation. This has not been possible before because the genetic sequence of the regulatory regions is much larger than the gene itself, sometimes ten times as large, and working with large pieces of DNA for gene expression is difficult. One way scientists deliver genes to cells is using viruses, which have evolved as powerful gene-delivery machines. However, most viruses are too small to carry the large pieces of DNA required when the regulatory elements are included. New advances in viral delivery methods using herpes simplex virus, a large DNA virus, now allow us to deliver genes with all their regulatory elements. The virus has been engineered into a gene delivery vector, which means all the disease-causing viral DNA has been removed, leaving only the bare minimum required for gene delivery. Now, the viral vector can carry human genes with all their large regulatory elements and deliver them efficiently to cultured cells in the laboratory. This breakthrough was originally made by Dr Wade-Martins in 2001 and the system is being continuously improved in his laboratory at Oxford University. In this project Dr Wade-Martins is teaming up with scientists from the Sanger Institute, at Hinxton just outside Cambridge, one of the largest centres for genetic studies in the world. Together they will be making a complete collection of all mouse genes, including their regulatory elements, in a format which can be used to look for new genes based on their function. These tests can take place in either mouse or human cells because the DNA sequences of humans and mice are extremely similar. The collection of genes is called a library, and will contain all the approximately 30,000 genes present in a mouse. The collection will be made available to the scientific community and will be an extremely valuable new resource. We will test the library by looking for genes involved in a disease called Fanconi's anaemia, a severe disease which causes cancer and bone-marrow failure. Previous attempts to find some of the genes for this disease have failed, and we believe our new approach has a high chance of success. We will also use the library to look for gene involved in the control of stem cells. Stem cells are cells which can become any cell type, and understanding how they are regulated by genes to become, for example, a brain cell, muscle cell or liver cell is one of the key questions in biology at the moment. Overall, this is an exciting new project bringing together two laboratories with similar interests in a area of research in which the UK is a world leader.

最近完成了获得所有人类基因的完整DNA序列（称为人类基因组）的项目，开辟了生物学的新时代。我们现在能够提出一系列以前不可能的实验。我们基因的DNA序列证实，我们绝大多数的DNA序列并不提供制造蛋白质的信息，但包含调控信息来打开和关闭基因，或者在发育的正确时间在正确的细胞中上下调节蛋白质的生产。这种DNA序列被称为非编码DNA，以前很难定义，也很难研究。多年来，从染色体中提取基因序列并利用它在实验室培养的细胞中制造或“表达”蛋白质已经成为可能。然而，以前从染色体中取出一个基因及其所有调控元件并不容易。在细胞内，基因表达的控制是复杂的，如果基因在没有天然调控元件的情况下使用，就很难控制它们何时产生蛋白质以及产生多少。该项目将收集所有基因，包括第一次它们的调控序列，以一种可以将它们传递到细胞中以在正确调控下制造蛋白质的方式。这在以前是不可能的，因为调控区的基因序列比基因本身大得多，有时是基因本身的十倍，而且很难用大块DNA进行基因表达。科学家将基因传递到细胞的一种方法是使用病毒，病毒已经进化成为强大的基因传递机器。然而，大多数病毒太小，无法携带包含调控元件时所需的大块DNA。使用单纯疱疹病毒（一种大型DNA病毒）的病毒递送方法的新进展现在允许我们递送具有所有调控元件的基因。该病毒已被改造成基因递送载体，这意味着所有致病病毒DNA已被去除，只留下基因递送所需的最低限度。现在，病毒载体可以携带人类基因及其所有大型调控元件，并将其有效地传递到实验室培养的细胞中。这一突破最初是由Wade-Martins博士在2001年取得的，该系统正在他在牛津大学的实验室中不断改进。在这个项目中，韦德-马丁斯博士与桑格研究所的科学家合作，桑格研究所位于剑桥外的欣克斯顿，是世界上最大的遗传学研究中心之一。他们将共同收集所有小鼠基因，包括它们的调控元件，以一种可用于根据其功能寻找新基因的格式。这些测试可以在小鼠或人类细胞中进行，因为人类和小鼠的DNA序列非常相似。基因的集合被称为文库，将包含小鼠中存在的所有大约30，000个基因。这些资料将提供给科学界，将是一种极为宝贵的新资源。我们将通过寻找与范可尼贫血症有关的基因来测试这个文库，范可尼贫血症是一种严重的疾病，会导致癌症和骨髓衰竭。以前试图找到这种疾病的一些基因已经失败，我们相信我们的新方法有很高的成功机会。我们还将利用该文库寻找参与干细胞调控的基因。干细胞是可以变成任何细胞类型的细胞，了解它们如何受基因调控成为脑细胞，肌肉细胞或肝细胞是目前生物学的关键问题之一。总的来说，这是一个令人兴奋的新项目，将两个在英国处于世界领先地位的研究领域具有相似兴趣的实验室聚集在一起。

项目成果

The infectious BAC genomic DNA expression library: a high capacity vector system for functional genomics.

• DOI: 10.1038/srep28644
• 发表时间: 2016-06-29
• 期刊: Scientific reports
• 影响因子: 4.6
• 作者: Lufino MM;Edser PA;Quail MA;Rice S;Adams DJ;Wade-Martins R
• 通讯作者: Wade-Martins R