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Genomic analyses of autism spectrum disorders

自闭症谱系障碍的基因组分析

基本信息

批准号：
7650753
负责人：
VALERIE W HU
金额：
$ 1.87万
依托单位：
GEORGE WASHINGTON UNIVERSITY
依托单位国家：
美国
项目类别：
财政年份：
2006
资助国家：
美国
起止时间：
2006-08-01 至 2009-04-30
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/7650753
关键词：
Affect Age Algorithms Autistic Disorder Automobile Driving Biological Markers Biological Neural Networks Biology Blood Blood Cells Brain Candidate Disease Gene Cell Line Cell physiology Cells Characteristics Class Classification Critical Pathways DNA Microarray Chip DNA Microarray format Data Databases Defect Detection Development Diagnosis Diagnostic Disease Early Intervention Elements Exhibits Gene Expression Gene Expression Profiling Genes Genetic Genetic Determinism Genomics Genotype Goals Impairment Individual Language Maps Metabolic Pathway Methods Molecular Molecular Profiling Monozygotic Twinning Monozygotic twins Nervous System Physiology Parents Peripheral Phenotype Polymerase Chain Reaction Process Quantitative Trait Loci Questionnaires Relative (related person)Reporting Screening procedure Severities Siblings Signal Transduction Subgroup Susceptibility Gene Testing Therapeutic Intervention Tissue-Specific Gene Expression Twin Multiple Birth Variant autism spectrum disorder base behavior observation brain tissue genetic resource instrument lymphoblastoid cell line teacher

项目摘要

DESCRIPTION (provided by applicant): The twin goals of this study are to use large-scale genomic methods to identify biomarkers of autism spectrum disorders (ASD) in cell lines derived from autistic individuals, and to gain a better understanding of the biology of these disorders. The central hypothesis driving this analytical approach is that blood cells from individuals with ASD will reflect molecular defects or genetic control elements that are relevant to autism. This hypothesis and approach is supported by of our preliminary findings: 1) cell lines derived from the blood of three identical twin pairs that differ in severity of ASD show a different profile of expressed genes; 2) the shared highly differentially expressed genes are significantly enriched in pathways critical to the development and function of the nervous system; 3) the levels of expression of certain genes appear to be related to the severity of the disorder when compared to the levels of expression of the same genes in cell lines from respective non-affected siblings; 4) candidate genes from preliminary microarray studies have associated quantitative trait loci containing reported autism susceptibility genes or loci. Thus, this differential expression profile which is observed in easily accessible blood-derived cells may be reflective of aberrant gene expression in the autistic vs. normal brain. This study will utilize DNA microarrays to: 1) identify differentially expressed genes in lymphoblastoid cell lines from individuals with ASD in comparison to unaffected individuals; 2) determine whether subgroups of ASD segregated according to phenotypic expression of ASD using existing diagnostic instruments, such as the ADI-R, can be differentiated through gene expression profiling; 3) build a classifier for ASD based on various class prediction algorithms, including k-nearest neighbors, centroid classification, and neural networks; 4) analyze signaling or metabolic pathways affected in the experimental subgroups; 5) map and identify genetic determinants that are responsible for differentially expressed genes using existing genetic data in the Autism Genetics Resource Exchange genotype database. At present, diagnosis of ASD relies primarily upon sometimes biased behavioral observations by clinicians or therapists and parent/teacher questionnaires. Reliable biomarkers would greatly facilitate the early and definitive detection of these disorders, thereby permitting early intervention and therapy.

描述（由申请人提供）：本研究的双重目标是使用大规模基因组方法来鉴定来自自闭症个体的细胞系中自闭症谱系障碍（ASD）的生物标志物，并更好地了解这些障碍的生物学。驱动这种分析方法的中心假设是，ASD患者的血细胞将反映与自闭症相关的分子缺陷或遗传控制元素。我们的初步发现支持了这一假设和方法：1）来自三对ASD严重程度不同的同卵双生子血液的细胞系显示出不同的表达基因谱; 2）共享的高度差异表达基因在神经系统发育和功能的关键途径中显著富集; 3）当与来自相应未受影响的同胞的细胞系中相同基因的表达水平相比时，某些基因的表达水平似乎与病症的严重程度相关; 4）来自初步微阵列研究的候选基因具有包含已报道的自闭症易感基因或位点的相关数量性状位点。因此，在容易获得的血液来源的细胞中观察到的这种差异表达谱可能反映了自闭症与正常大脑中的异常基因表达。本研究将利用DNA微阵列：1）鉴定ASD个体与未受影响个体相比的淋巴母细胞系中差异表达的基因; 2）确定是否可以通过基因表达谱来区分使用现有诊断仪器（如ADI-R）根据ASD表型表达分离的ASD亚组; 3）基于各种类别预测算法（包括k-最近邻、质心分类和神经网络）构建ASD的分类器; 4）分析实验亚组中受影响的信号或代谢途径; 5）使用自闭症遗传资源交换基因型数据库中的现有遗传数据，绘制并鉴定导致差异表达基因的遗传决定因素。目前，ASD的诊断主要依赖于临床医生或治疗师的有时有偏见的行为观察和家长/教师问卷调查。可靠的生物标志物将大大促进这些疾病的早期和明确的检测，从而允许早期干预和治疗。

项目成果

期刊论文数量（6）

专著数量（0）

科研奖励数量（0）

会议论文数量（0）

专利数量（0）

Gene expression profiling of lymphoblasts from autistic and nonaffected sib pairs: altered pathways in neuronal development and steroid biosynthesis.

DOI：
10.1371/journal.pone.0005775
发表时间：
2009-06-03
期刊：
PloS one
影响因子：
3.7
作者：
Hu VW;Nguyen A;Kim KS;Steinberg ME;Sarachana T;Scully MA;Soldin SJ;Luu T;Lee NH
通讯作者：
Lee NH

Subphenotype-dependent disease markers for diagnosis and personalized treatment of autism spectrum disorders.