Metagenomic profiling of oral polymicrobial flora in head and neck cancers

描述（由申请人提供）：当H。胃中的幽门螺杆菌与胃癌有关，根除幽门螺杆菌与胃癌的消退有关，因此建立了一个癌症发生的范式转换模型。许多细菌物种通常存在于口咽粘膜的各个区域，并且可能根据宿主的年龄和饮食消耗而波动。有趣的是，头颈部鳞状细胞癌（HNSCC）的发病率已被证明与口腔卫生相关，这可能表明细菌在这种特定恶性肿瘤的发病机制中的相关性。一些细菌会导致炎症，这可能会导致甲基化增加。使用基因组技术，我们已经证明了HNSCC和特定细菌种群之间的可能联系，基于它们的宏基因组谱。值得注意的是，我们在HNSCC中每个代谢组学分析的特定细菌亚群的存在与MDR 1甲基化状态之间存在原理性关联。因此，我们假设特定的细菌亚群，如宏基因组分析所揭示的，可以触发靶向甲基化事件，然后启动HNSCC的发生和/或进展。我们计划通过3个广泛的目标来解决这一假设：（1）利用最新的高通量测序技术来鉴定与HNSCC肿瘤发生、进展和/或预防相关的口咽粘膜中的细菌亚群，其创新的子目标是探索特定的微生物组学谱是否是HNSCC中观察到的场效应的一部分;（2）探讨HNSCC中影响炎症的特异性微生物“聚生体”，以及随后的靶肿瘤抑制基因的表观遗传学改变;（3）在功能上验证MAD 2和/或MDR 1在HNSCC肿瘤抑制中的参与。将询问由宏基因组谱反映的所得微生物种群与暴露和临床信息以及靶向甲基化的相关性。最后，我们将从功能上验证靶向甲基化是否与HNSCC肿瘤发生相关，或者是对炎症反应的随机甲基化效应。为了解决这个问题，我们将在HNSCC细胞系中过表达或敲低MDR 1，并检查对生长、凋亡、细胞形态或分化的任何影响。这项研究有望揭示特定的头部和颈部细菌植物群与癌症发生和发展的相关性。有趣的未来方向包括临床筛查特定细菌指标的存在，以提供早期癌症或癌前检测，并可能基于益生菌或抗生素进行预防。代谢组学图谱能够根据既往放射暴露或化疗区分样本，我们将对难治性疾病患者实施靶向筛查和/或去甲基化治疗。这种类型的数据也将指出早期发现，意识教育和预防药物和护理的更大作用。 公共卫生相关性：全世界每年诊断出超过500，000例头颈部癌症（HNSCC）的新病例，仅在美国就有超过11，000人/年死于这种侵袭性恶性肿瘤;尽管该主题的研究成果取得了巨大进步，但对于大多数患有这种疾病的晚期患者来说，总体结果在30多年来保持不变。接受积极手术切除癌症的患者有明显的毁容和生活质量下降，吞咽，嗅觉和听觉能力受损。如果成功的话，那么我们目前的提议有望对口腔中特定细菌亚群的作用有新的认识，这些细菌亚群导致炎症，关闭抑癌基因，从而导致HNSCC。如果是真的，那么我们可以利用我们的发现进行早期诊断，甚至用益生菌治疗进行预防。重要的是，即使对于晚期HNSCC或已经扩散的HNSCC，我们的研究结果也将有助于指出抗生素和药物，这些药物可以逆转癌症抑制基因，从而彻底改变治疗方法。

DESCRIPTION (provided by applicant): When H. pylori in the stomach was linked with gastric cancer, and its eradication associated with regression, a paradigm-shifting model of carcinogenesis was created. Many bacterial species normally reside in various regions of the oropharyngeal mucosa, and may fluctuate depending on the host's age and dietary consumption. Interestingly, the incidence of head and neck squamous cell carcinoma (HNSCC) has been shown to correlate with dental hygiene, which may suggest the relevance of bacteria in the pathogenesis of this particular malignancy. Some bacteria can result in inflammation, which can cause increased methylation. Using genomic technology, we have demonstrated a possible link between HNSCC and specific bacterial populations based on their metagenomic profiles. Notably, we have proof-of-principle association between the presence of particular bacterial subpopulations per metabiomic profiling and MDR1 methylation status in HNSCC. We therefore hypothesize that specific bacterial subpopulations, as revealed by metagenomic profiling, can trigger targeted methylation events which then initiate HNSCC genesis and/or progression. We plan to address this hypothesis via 3 broad aims: (1) To utilize most recent high throughput sequencing technologies to identify the bacterial subpopulations in the oropharyngeal mucosa associated with HNSCC tumor initiation, progression, and/or prevention, with the innovative sub-aim to explore if specific microbiomic profiles are part of the field effect seen in HNSCC; (2) To interrogate the specific microbial "consortia" influencing inflammation with consequent epigenetic alterations of target tumor suppressor genes in HNSCC; (3) To functionally validate the involvement of MAD2 and/or MDR1 in HNSCC tumor suppression. The resulting microbial populations as reflected by metagenomic profiles will be interrogated for correlation with exposure and clinical information and targeted methylation. Finally, we will functionally validate whether the targeted methylation is relevant in HNSCC tumorigenesis or a random methylation effect in response to inflammation. To address this, we will overexpress or knock-down MDR1 in HNSCC cell lines and examine any effect on growth, apoptosis, cell morphology, or differentiation. This study promises to reveal the relevance of specific head and neck bacterial flora to cancer initiation and progression. Interesting future directions include clinical screening for the presence of specific bacterial indicators in order to provide early cancer or pre-cancer detection and perhaps prevention, based on probiotics or antibiotics. With metabiomic profiles capable of distinguishing samples based on prior radiation exposure or chemotherapy, we will implement targeted screening and/or demethylation treatment for patients with refractory disease. This type of data will also point to larger roles for early detection, awareness education, and prevention from hygienists and nursing. PUBLIC HEALTH RELEVANCE: Over 500,000 new cases of head and neck cancers (HNSCC) are diagnosed worldwide annually, with more than 11,000 individuals/year succumbing to this aggressive malignancy in the United States alone; despite huge strides in research achievements in this topic, overall outcome has remained unchanged for over 3 decades for the majority of patients with advanced stages of this disease. Patients who receive aggressive surgery to remove the cancer have significant disfigurement and diminished quality of life, with impaired ability to swallow, smell, and hear. If successful, then our current proposal promises a new understanding of the role of specific subpopulations of bacteria in the mouth leading to inflammation which shuts off cancer-suppressing genes, thus leading to HNSCC. If true, then we can take advantage of our findings for the earliest diagnosis and even prevention with probiotic therapy. Importantly, even for advanced HNSCC or that which has spread, our findings will help point to antibiotics and agents that can turn back on the cancer-suppressing genes to revolutionize treatment.