The Bioorganic Chemistry of RNA editing by ADARs

ADAR 编辑 RNA 的生物有机化学

• 批准号: 8442338
• 负责人: PETER A. BEAL
• 金额: $ 26.36万
• 依托单位: UNIVERSITY OF CALIFORNIA AT DAVIS
• 依托单位国家: 美国
• 财政年份: 2001
• 资助国家: 美国
• 起止时间: 2001-03-01 至 2015-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8442338
• 关键词: ADAR1; Address; Adenosine; Aging; Amino Acids; Amyotrophic Lateral Sclerosis; Antisense Oligonucleotides; Behavior; Biochemistry; Biological Process; Chemistry; Codon Nucleotides; Complex; Coupled; Crystallization; Cyclic Peptides; DNA Repair; DNA Repair Enzymes; DRADA2b protein; Deaminase; Deamination; Enzymes; Epigenetic Process; Epilepsy; G-Protein-Coupled Receptors; Gated Ion Channel; Gene Expression; Genetic Techniques; Guanosine; Human; Inosine; Knowledge; Lead; Length; Ligands; Link; Malignant Neoplasms; Maps; Mental Depression; Messenger RNA; Methods; Modification; Molecular Biology Techniques; Nervous System Physiology; Nervous system structure; Peptoids; Prader-Willi Syndrome; Process; Proteins; RNA; RNA Binding; RNA Editing; Reaction; Regulation; Reporting; Research; Research Design; Role; Saccharomyces cerevisiae; Site; Structure; Structure-Activity Relationship; Synthesis Chemistry; Testing; Therapeutic; Time; Tissues; Transcript; Translations; Vertebral column; base; follow-up; genetic selection; human disease; inhibitor/antagonist; mRNA Precursor; mutant; novel; nucleoside analog; protein function; small molecule; tool; voltage

DESCRIPTION (provided by applicant): The RNA editing ADAR enzymes convert adenosines to inosines in RNA. Since inosine is decoded as guanosine during translation, this modification can lead to changes in the meaning of codons (recoding). There are at least 50 different A to I sites in human mRNAs that cause recoding. Recoding is common in the nervous system with targets including ligand-gated ion channels, voltage-gated ion channels and G-protein coupled receptors. Indeed, ADARs are necessary for a properly functioning nervous system and are known to regulate behavior in metazoans. However, little is known about the effect of recoding for targets with roles outside the nervous system. Perturbations in A to I editing have been observed in several human diseases including amyotrophic lateral sclerosis (ALS), dyschromatosis symmetrica hereditaria (DSH), Prader-Willi syndrome (PWS), epilepsy, depression and cancer. A recent study also implicates ADARs in the control of aging. Despite the significance of this form of epigenetics, our understanding of the mechanism and regulation of A to I editing is deficient. For instance, the selectivity for specific adenosines within ADAR substrates remains difficult to fully explain due to a lack of detailed characterization for ADAR-RNA complexes. Furthermore, pharmacological methods for controlling RNA editing do not currently exist limiting the types of studies possible to probe its biological function. In this competitive renewal of an R01 project, these knowledge gaps will be addressed through the application of synthetic chemistry coupled with techniques from molecular biology and biochemistry. The results of these studies will extend our basic understanding of the process of RNA editing and its effects on protein function as well as lead to new methods for its control. Methods for site-selective inhibition of RNA editing will be developed. Backbone modified antisense oligonucleotides and helix- threading peptoids that target RNA editing substrates will be investigated for this purpose. In addition, we will define factors controlling editing selectivity and mechanisms of inhibition for the ADAR2 reaction. A functional screen will be used to define the importance in controlling editing site selectivity of the length and sequence in a linker structure between two ADAR2-RNA interaction domains. In addition, ADAR2 mutants containing unnatural amino acids and RNA containing nucleoside analogs will be used to map ADAR2-RNA interactions. A novel genetic selection will identify cyclic peptide inhibitors of ADAR2 and follow-up studies with these inhibitors will identify points in the ADAR2 reaction susceptible to small molecule control. In addition, we will define the basis for ADAR1 editing of the mRNA for the DNA repair enzyme NEIL1. These efforts will define structure/activity relationships for the ADAR1 reaction and extend our understanding of the recoding of targets with functions outside the nervous system. Finally, this project will produce new molecules for crystallization trials of ADAR-RNA complexes.

描述（由申请方提供）：RNA编辑阿达尔酶将RNA中的腺苷转化为肌苷。由于肌苷在翻译过程中被解码为鸟苷，这种修饰可能导致密码子含义的变化（重新编码）。在人类mRNA中至少有50个不同的A到I位点引起重新编码。靶点包括配体门控离子通道、电压门控离子通道和G蛋白偶联受体。事实上，ADAR对于正常运作的神经系统是必要的，并且已知其调节后生动物的行为。然而，人们对神经系统以外的目标重新编码的效果知之甚少。已经在几种人类疾病中观察到A至I编辑的扰动，包括肌萎缩性侧索硬化症（ALS）、遗传性色素异常症（DSH）、Prader-Willi综合征（PWS）、癫痫、抑郁症和癌症。最近的一项研究也暗示ADAR在控制衰老方面。尽管这种形式的表观遗传学意义重大，但我们对A到I编辑的机制和调控的理解是不足的。例如，由于缺乏对ADAR-RNA复合物的详细表征，阿达尔底物内特异性腺苷的选择性仍然难以完全解释。此外，目前还不存在控制RNA编辑的药理学方法，这限制了可能探索其生物学功能的研究类型。在R 01项目的竞争性更新中，这些知识差距将通过应用合成化学与分子生物学和生物化学技术相结合来解决。这些研究的结果将扩展我们对RNA编辑过程及其对蛋白质功能的影响的基本理解，并导致其控制的新方法。将开发位点选择性抑制RNA编辑的方法。为此目的，将研究靶向RNA编辑底物的骨架修饰的反义寡核苷酸和螺旋穿线类肽。此外，我们将定义控制编辑选择性的因素和抑制ADAR 2反应的机制。将使用功能筛选来定义控制两个ADAR 2-RNA相互作用结构域之间的接头结构中的长度和序列的编辑位点选择性的重要性。此外，含有非天然氨基酸的ADAR 2突变体和含有核苷类似物的RNA将用于绘制ADAR 2-RNA相互作用。一种新的遗传选择将确定ADAR 2的环肽抑制剂，并且使用这些抑制剂的后续研究将确定ADAR 2反应中易受小分子控制的点。此外，我们将定义ADAR 1编辑DNA修复酶NEIL 1 mRNA的基础。这些努力将定义ADAR 1反应的结构/活性关系，并扩展我们对神经系统外功能靶点重新编码的理解。最后，该项目将产生用于ADAR-RNA复合物结晶试验的新分子。