Phenotyping Skeletal QTLs in a DO Mouse Population

DO 小鼠群体中骨骼 QTL 的表型分析

• 批准号: 8829756
• 负责人: David W. Rowe
• 金额: $ 17.84万
• 依托单位: UNIVERSITY OF CONNECTICUT SCH OF MED/DNT
• 依托单位国家: 美国
• 财政年份: 2014
• 资助国家: 美国
• 起止时间: 2014-04-01 至 2016-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8829756
• 关键词: Affect; Age; Age-Months; Aging; Algorithms; Animal Model; Animals; Bioinformatics; Biological; Biology; Biomedical Research; Bone remodeling; Budgets; Candidate Disease Gene; Cartilage; Cells; Chondrocytes; Chromosome Mapping; Clinical Research; Communities; Complex; Complex Genetic Trait; Computers; Core Facility; Coupled; Data; Degenerative polyarthritis; Development; Disease; Elderly; Environment; Environmental Risk Factor; Female; Funding; Generations; Genes; Genetic; Genetic Variation; Genetic study; Genome; Genomics; Goals; Grant; Health; Hereditary Disease; Histologic; Histological Techniques; Histology; Housing; Human; Human Biology; Image; Image Analysis; Inbred Mouse; Inbreeding; Individual; Intervention; Investments; Joints; Lactation; Link; Maintenance; Maps; Measurement; Medical; Medicine; Methods; Minerals; Morphology; Multiparity; Multiple Pregnancy; Mus; Online Systems; Osteoporosis; Pathway interactions; Patients; Phenotype; Physiological; Population; Pregnancy; Quantitative Trait Loci; Recovery; Regulation; Relative (related person); Research; Resolution; Resources; Sampling; Scanning; Services; Severity of illness; Shock; Skeleton; Study models; Sum; Surface; Technology; The Jackson Laboratory; Thick; Time; Tissues; Variant; age effect; articular cartilage; base; bone; bone health; bone mass; cohort; cost; density; design; digital; disorder risk; empowered; fluorescence microscope; gene interaction; imaging modality; male; meetings; mineralization; novel; personalized medicine; skeletal; tool; trait

DESCRIPTION (provided by applicant): The genomic revolution promises major medical advances by tailoring interventions to an individual's unique genetic constellation. This hope is predicated on understanding the contribution to human health of each gene and its interaction with the environment. This essential information will have to come from model organisms that replicate human biology. The mouse genetics community has responded to this challenge by developing genetically defined and highly polymorphic (diversity outbreed, DO) mouse lines for quantitative trait linkage (QTL) studies capable of directly identifying the genetic unit underlyin a phenotypic extreme. The skeletal biology field is not yet taking advantage of this advance in part because of the relative insensitivity of affordable tools used for bone/cartilage phenotyping, and the expensive and time consuming effort required to establish the mouse colonies and to perform a QTL study. Given the shrinking budget for biomedical research, the skeletal biology community has to reinvent how it conducts a QTL study if it wants to participate in promise of personalized medicine. This grant proposes one avenue for skeletal medicine to participate in identifying genetic loci that contribute to complex medical diseases such as osteoporosis or degenerative arthritis. It has two objectives. The first is a histological approach for assessing dynamic and cellular histomorphology of bone and articular cartilage that is compatible with a computer-based QTL study. The method is relatively low cost and high through put and the quantitation of the images is observer independent. The second is ability to append a skeletal QTL study to an ongoing and funded project designed for another biological question that is compatible with the skeletal question. In Aim 1, a well-developed computer driven bone histomorphogical method will be used to assess the skeleton status in two DO studies. (1) In 9 month old multiparous female mice. Unlike all previous QTL studies that use virgin females, this study may identify genes that are needed to recover bone mineral after lactation is competed. (2) In male and female mice at 6, 12 and 18 months of age. Aging studies of the skeleton have been particularly difficult to perform and partnering with a NIA supported Shock core facility makes this opportunity possible. In both cases, the major fixed costs for conducting the study are covered. In Aim 2, the histological/imaging methods and image analysis algorithms will be refined to provide a computer based histomorphometric assessment of articular cartilage health that is compatible with the same sections used for the bone studies. The method will be validated using existing sections from 5 different inbred mouse lines before it is applied to the two DO studies. The demonstration that our digital histological technology can be coupled with multipurpose DO study to identify genetic loci linked to extreme skeletal variation in a format that is web-based data-ready should empower the skeletal biology research community to participate in the personalized medicine revolution.

描述（由申请人提供）：基因组革命通过针对个人独特的基因群进行量身定制的干预，有望取得重大的医学进步。这一希望建立在了解每个基因对人类健康的贡献及其与环境的相互作用的基础上。这些基本信息必须来自复制人类生物学的模式生物。为了应对这一挑战，小鼠遗传学界已经开发出了遗传定义的、高度多态性的（多样性近交种，DO）小鼠系，用于能够直接识别表型极端背后的遗传单位的数量性状连锁（QTL）研究。骨骼生物学领域还没有利用这一进步，部分原因是用于骨/软骨表型的经济实惠的工具相对不敏感，