Global Genomic and Proteomic Profiling of African Children with Typhoid Fever

非洲伤寒儿童的全球基因组和蛋白质组分析

• 批准号: 8702917
• 负责人: Stephen Obaro
• 金额: $ 40.34万
• 依托单位: UNIVERSITY OF NEBRASKA MEDICAL CENTER
• 依托单位国家: 美国
• 财政年份: 2012
• 资助国家: 美国
• 起止时间: 2012-08-17 至 2016-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8702917
• 关键词: ATP-Binding Cassette Transporters; Acute; African; Algorithms; Antibodies; Area; Asia; Bacteremia; Bacteria; Bacterial Infections; Bioinformatics; Biological Assay; Biological Markers; Blood; Bone Marrow; Cessation of life; Child; Complex; Country; Custom; Data; Detection; Development; Diagnosis; Diagnostic; Diagnostic Procedure; Diagnostic tests; Disease; Disease Outbreaks; Ensure; Enteral; Enzyme-Linked Immunosorbent Assay; Fever; Gene Chips; Gene Cluster; Gene Expression; Gene Expression Profile; Gene Proteins; Genes; Genomics; Goals; Housing; Human; Immune response; Infection; Infectious Disease Immunology; Inflammatory; Knowledge; Lead; Licensing; Molecular; Molecular Profiling; Nigeria; Onset of illness; Pathway interactions; Patients; Peptides; Persons; Phase; Pilot Projects; Primary Prevention; Procedures; Process; Proteins; Proteome; Proteomics; Public Health; Publishing; Recovery; Recruitment Activity; Resources; Salmonella; Salmonella typhi; Sampling; Serological; Serum; South Africa; Subgroup; System; Testing; Time; Typhoid Fever; Vaccination; Vaccine Therapy; Vaccines; Validation; World Health Organization; aged; base; burden of illness; clinical Diagnosis; cohort; disorder control; extracellular; global health; improved; innovation; insight; multidisciplinary; next generation; novel diagnostics; novel vaccines; pathogen; peripheral blood; protective efficacy; prototype; public health relevance; response; success; tool; vaccine development

DESCRIPTION (provided by applicant): Typhoid fever is caused by Salmonella enteric serovar Typhi (S. typhi), a human specific pathogen. The World Health Organization (WHO) recognizes typhoid fever as a global health problem, with an estimated 21 million cases and 200,000-600,000 deaths annually. In Africa and South Asia, young children represent a subgroup with the highest disease burden. The onset of the illness is insidious and clinical diagnosis is often unreliable. Definitive diagnosis through blood or bone-marrow culture is labor-intensive, expensive, and invasive, with a sensitivity of 40 to 70%. WHO recommends routine typhoid fever vaccination but currently licensed vaccines provide only 55-75% protection against the disease. Therefore, there is an urgent need to develop rapid, sensitive, and inexpensive diagnostic methods, as well as more efficacious vaccines for countries where typhoid fever remains a major public health burden. Our long term goals are 1) to develop innovative molecular diagnostic assays for rapid and inexpensive detection of typhoid fever and, 2) to better understand the molecular mechanisms of host response to facilitate the development of next-generation typhoid fever vaccines. Our immediate objective is to obtain global gene expression and proteomic profiles of S. typhi- infected African children, identify and validate the classifier genes and proteins as potential diagnostic biomarkers and vaccine targets. We have already established a bacteremia surveillance system in central Nigeria since 2008. A pilot study was initiated from a small cohort of Nigerian children with typhoid fever. Our preliminary data showed unique gene expression profiles of host response in peripheral blood of children with typhoid fever compared with other bacteremic infections, as well as patients in acute vs. convalescent phase. Here, we hypothesize that distinct classifier genes and proteins based on host response in the peripheral blood and serum can be obtained to discriminate typhoid fever from other bacteremic infections and healthy controls. Our specific aims are: 1) Define typhoid fever-specific host response classifier genes using gene expression (GE) microarrays, 2) Discover specific serum anti-typhoid fever proteins using newly established S. typhi proteome microarrays and develop prototype serologic assay for acute typhoid (ELISA) 3) Validate classifier genes and field-test prototype ELISAs using new, independent cohorts. To accomplish these objectives, we have assembled a multidisciplinary team with expertise in infectious disease, immunology, molecular genomics/proteomics, microarrays, and bioinformatics to ensure success of this project. These studies will identify distinct classifier genes and proteins f typhoid fever infection based on immunological responses. Classifiers that discriminate S. typhi from other bacteremia are possible to develop and offer rapid, inexpensive, non-invasive, and sensitive molecular diagnostic assays specific for typhoid fever. Classifier proteins obtained from our new, custom whole-proteome typhoid fever microarrays will provide new insights of targeted proteins and antibodies for next-generation vaccine development.

描述（由申请人提供）：伤寒是由伤寒沙门氏菌引起的。伤寒），一种人类特有的病原体。世界卫生组织（WHO）认为伤寒是一个全球性的健康问题，估计每年有2100万例病例和20万至60万例死亡。在非洲和南亚，幼儿是疾病负担最重的一个亚组。该病发病隐匿，临床诊断往往不可靠。通过血液或骨髓培养进行诊断是劳动密集型的，昂贵的，侵入性的，敏感性为40 - 70%。世卫组织建议常规接种伤寒疫苗，但目前获得许可的疫苗只能提供55-75%的保护。因此，迫切需要开发快速，敏感和廉价的诊断方法，以及为伤寒仍然是主要公共卫生负担的国家开发更有效的疫苗。我们的长期目标是：1）开发创新的分子诊断检测方法，用于快速和廉价的伤寒检测; 2）更好地了解宿主反应的分子机制，以促进下一代伤寒疫苗的开发。我们的近期目标是获得S.伤寒感染的非洲儿童，确定和验证 将基因和蛋白质分类为潜在的诊断生物标志物和疫苗靶标。自2008年以来，我们已经在尼日利亚中部建立了菌血症监测系统。从一小群尼日利亚伤寒儿童开始了一项试点研究。我们的初步数据显示，与其他菌血症感染以及急性期与恢复期患者相比，伤寒患儿外周血中宿主反应的独特基因表达谱。在这里，我们假设，不同的分类基因和蛋白质的基础上，在外周血和血清中的主机响应可以得到区分伤寒从其他菌血症感染和健康对照。我们的具体目标是：1）使用基因表达（GE）微阵列确定伤寒特异性宿主应答分类器基因，2）使用新建立的S.伤寒蛋白质组微阵列，开发急性伤寒血清学试验原型（ELISA），3）使用新的独立队列对分类器基因和ELISA原型进行现场测试。为了实现这些目标，我们组建了一个多学科团队，拥有传染病，免疫学，分子基因组学/蛋白质组学，微阵列和生物信息学方面的专业知识，以确保该项目的成功。这些研究将基于免疫反应来鉴定伤寒感染的不同分类基因和蛋白质。区分S的分类器。从其它菌血症中分离伤寒的方法有可能开发并提供快速、廉价、非侵入性和灵敏的伤寒特异性分子诊断测定。从我们新的定制全蛋白质组伤寒微阵列中获得的分类蛋白质将为下一代疫苗开发提供靶向蛋白质和抗体的新见解。