Reference Profiles of Extracellular RNA in 4 Body Fluids of Healthy Humans

描述(由申请人提供)： 在已知的血液分子中，有一类新的分子，即细胞外RNAs(exRNAs.)其中一些是很好的生物标志物候选者，但也有相当数量的exRNAs来自微生物组。内源和外源外源RNA都携带大量信息，可能是细胞功能的效应器。美国国立卫生研究院共同基金exRNA联盟目前正在研究并将人体内的exRNA应用于诊断和治疗。这项工作需要一个基础，即健康个体可靠的外源RNA谱图谱。我们已经组建了一个经验丰富的跨学科团队来仔细描述这些参考RNA图谱，并改进这样做的方法。PI将与联合PI的Debbie Nickerson(密歇根大学基因组中心联席主任，测序)和Kai Wang(系统生物学研究所，数据分析)、联合调查员、Elaine Peskind、退伍军人管理局中心和UW密切合作，提供建议、咨询和合作(Paul Wilmes，大学)。卢森堡大学；贝勒大学的Aleks Milosavljevic；大学的Muneesh Tewari。来自密歇根州。)我们建议产生、分析和传播来自相同健康受试者的血浆、血清、脑脊液和唾液的exRNA图谱：三个年龄段(31到101岁)的男性和女性的数量大致相同。这些同时从相同受试者身上采集的匹配的血清、血浆、唾液和脑脊液样本是这项提议的关键资产。我们最近的工作揭示了exRNA研究的一个新维度。血浆中微生物RNA(细菌和真菌)的存在引发了关于其来源和功能的重要问题。我们将使用我们的计算管道，包括DMRR(DIAC)的工具，来表征脂泡内外的内源exRNA(en-exRNA)和外源exRNA(ex-exRNA)(在人的血清、血浆、唾液和脑脊液中)。我们将为每个样本构建四个NextGen文库：囊泡内和囊泡外，以及短插入库和长插入库。我们建议在五年内描述一组180名受试者的特征，并分析概况数据和元数据，并将其存入由ECRP财团的DMRR创建和维护的exRNA图谱中。我们将完成一种产生序列特异性文库偏差校正因子的新方法的开发和测试。由于微生物序列数据库的更新，我们将定期重新鉴定ex-exRNA。产生的数据将使我们能够检查单个exRNA和exRNA簇作为受试者属性(包括年龄和性别)的函数的差异。该项目将分两个阶段进行。在第一阶段(第1年和第2年)，将在数据采集和分析期间测试各种方法，包括偏差校正法。第二阶段(第3-5年)将只包括数据生成和分析。我们建议的一个主要重点和优势是在同一主题上严格收集、匹配的多个体液样本，重点是准确获取和分析exRNA，以及我们在拟议工作的各个方面的丰富经验。

DESCRIPTION (provided by applicant): Among the known blood molecules is a new class, the extracellular RNAs (exRNAs.) Some of these are excellent biomarker candidates, but there are also a significant number of exRNAs derived from the microbiome. Both endogenous and exogenous exRNAs carry much information and could be effectors of cellular function. The NIH Common Fund exRNA consortium is now researching and applying exRNA in humans to diagnostics and therapeutics. A foundation for this effort, reliable profiles of the exRNA spectrum in healthy individuals, is needed. We have assembled an experienced, interdisciplinary team to carefully characterize these reference RNA profiles, and to improve the methods for doing so. The PI will work closely with Co-PI's Debbie Nickerson (UW Genomics Center co-Director, Sequencing), and Kai Wang (Institute for Systems Biology, data analysis), Co-Investigator, Elaine Peskind, VA Center and UW, selecting and providing samples), and co-investigators to provide advice, consultation, and collaboration (Paul Wilmes, Univ. of Luxembourg; Aleks Milosavljevic, Baylor; and Muneesh Tewari, Univ. of Mich.) We propose the generation, analysis, and dissemination of exRNA profiles of plasma, serum, CSF and saliva from the same healthy subjects: roughly equal numbers of men and women in three age categories (31 to 101 years.) These matched samples of serum, plasma, saliva and CSF collected at the same time from the same subjects are a key asset of this proposal. A new dimension in exRNA research was revealed by our recent work. The presence of microbial RNA (bacterial and fungal) in blood plasma raises important questions concerning its origins and functions. We will use our computational pipeline, including tools from the DMRR (DIAC), to characterize both endogenous exRNAs (en-exRNA) and exogenous exRNA (ex-exRNA) in and outside of lipid vesicles (in human serum, plasma, saliva and CSF.) We will do four NextGen libraries per sample: in and out of vesicles, and short and long insert libraries. We propose to characterize a set of 180 subjects over five years, and analyze and deposit profile data and metadata in the exRNA Atlas created and maintained by the DMRR of the ECRP consortium. We will complete the development and testing of a novel approach to generate sequence-specific library bias correction factors. We will periodically re-characterize the ex-exRNA due to microbial sequence database updates. The data generated will enable us to examine the variance in individual exRNAs and clusters of exRNAs as a function of subject attributes (including age and gender.) The project will be carried out in two phases. In the first phase (years 1 and 2), methods will be tested during data acquisition and analysis, including the bias correction method. The second phase (years 3-5) will consist of data generation and analysis only. A major emphasis and strength of our proposal is the rigorously collected, matched samples of multiple body fluids on the same subjects, with emphasis on accurate acquisition and analysis of exRNA and our extensive experience in all aspects of the proposed work.