TRiPOD: Toward Reusable Phenotypes in Observational Data for AD/ADRD - managing definitions and correcting bias

TRiPOD：在 AD/ADRD 观察数据中实现可重复使用的表型 - 管理定义和纠正偏差

• 批准号: 10642888
• 负责人: Yong Chen
• 金额: $ 78.43万
• 依托单位: UNIVERSITY OF PENNSYLVANIA
• 依托单位国家: 美国
• 财政年份: 2021
• 资助国家: 美国
• 起止时间: 2021-09-15 至 2026-05-31
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10642888
• 关键词: Active Learning; Address; Affect; Algorithms; Alzheimer' s Disease; Alzheimer' s disease related dementia; American; Artificial Intelligence; Cause of Death; Clinical Research; Communities; Complex; Data; Data Analyses; Deposition; Disease; Drug Exposure; Electronic Health Record; Engineering; Epidemiologist; Etiology; Evaluation; FAIR principles; Goals; Healthcare; Incentives; Incidence; Informatics; Investigation; Joints; Knowledge; Literature; Long-Term Care; Medical; Methods; Modernization; Observational Study; Ontology; Outcome; Pathogenesis; Patients; Phenotype; Prevention; Probability; Protocols documentation; Publication Bias; Reproducibility; Research; Risk Factors; Sampling; Source; Standardization; Statistical Models; Terminology; Translational Research; care systems; cohort; community engagement; data management; effective therapy; hospital services; improved; insight; knowledge base; novel; payment; phenotypic data; phenotyping algorithm; prevent; repository; risk stratification; social; tool; trait; treatment response; web portal

Project Summary Large observational data such as electronic health records (EHRs) and medical claims have become an enabling source for facilitating clinical and translational research including Alzheimer's Disease and Alzheimer's Disease Related Dementia (AD/ADRD). One major challenge for conducting observational AD/ADRD studies is about phenotyping – there is a lack of a centralized repository for hosting and standardizing phenotype definitions in AD/ADRD research and few methods have been developed to address bias associated with phenotyping errors in observation data. Therefore, the overarching goal of this proposal is to fully develop a joint effort between medical informaticians, statisticians, clinicians, and epidemiologists with a focus on building a rigorous set of methods and tools for managing phenotype definitions and for correcting bias in observational data analysis, through modern knowledge engineering and data-driven statistical modeling. To achieve that goal, we propose three specific aims in this study: (1) Aim 1 - Collect, normalize, and share definitions of common phenotypes used in AD/ADRD observational research; (2) Aim 2 - Develop novel algorithms to correct bias associated with phenotyping errors when users apply existing phenotype definitions to local data; and (3) Aim 3 - Validate, refine, and disseminate proposed methods and tools by demonstration studies and community engagement. We believe informatics methods and tools proposed here will improve current practice on phenotypic data management and analysis, thus enhancing the reproducibility and quality of observational studies on AD/ADRD.

项目摘要 大型观察性数据，如电子健康记录(EHR)和医疗索赔 成为促进包括阿尔茨海默氏症在内的临床和翻译研究的有利来源 疾病和阿尔茨海默病相关痴呆(AD/ADRD)。面临的一个主要挑战 进行观察性AD/ADRD研究是关于表型的--缺乏集中的 用于托管和标准化AD/ADRD研究中的表型定义的存储库 已经开发了一些方法来解决与观察中的表型错误相关的偏差 数据。因此，该提案的总体目标是充分发展两国之间的共同努力 医疗信息学家、统计学家、临床医生和流行病学家，重点是建立 一套严格的方法和工具，用于管理表型定义和纠正 通过现代知识工程和数据驱动的统计进行观测数据分析 模特儿。为了实现这一目标，我们在本研究中提出了三个具体目标：(1)目标1-收集， 标准化和共享AD/ADRD观测中使用的常见表型的定义 研究；(2)目标2-开发新的算法来纠正与表型错误相关的偏见 当用户将现有的表型定义应用于本地数据时；以及(3)目标3-验证、改进和 通过示范研究和社区参与传播拟议的方法和工具。 我们相信，这里提出的信息学方法和工具将改善当前的实践 表型数据管理和分析，从而提高表型数据的再现性和质量 AD/ADRD的观测研究。

项目成果

Adding caplacizumab to standard of care in thrombotic thrombocytopenic purpura: a systematic review and meta-analysis.

• DOI: 10.1182/bloodadvances.2022008443
• 发表时间: 2023-05-23
• 期刊: BLOOD ADVANCES
• 影响因子: 7.5
• 作者: Djulbegovic, Mia;Tong, Jiayi;Xu, Alice;Yang, Joanna;Chen, Yong;Cuker, Adam;Pishko, Allyson M.
• 通讯作者: Pishko, Allyson M.