Iron-CLAD: securely advancing AoU participant characterization with provenplatforms and collaborations

Iron-CLAD：通过经过验证的平台和协作安全地推进 AoU 参与者特征描述

• 批准号: 10829135
• 负责人: CHRISTOPHER G CHUTE
• 金额: $ 1061.79万
• 依托单位: UNIVERSITY OF COLORADO DENVER
• 依托单位国家: 美国
• 财政年份: 2023
• 资助国家: 美国
• 起止时间: 2023-09-02 至 2024-04-14
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10829135
• 关键词: Address; Affect; African American population; All of Us Research Program; Back; Bayesian Modeling; Biomedical Research; Caring; Classification; Clinical; Clinical Data; Collaborations; Communicable Diseases; Data; Data Collection; Data Linkages; Data Set; Data Sources; Diabetes Mellitus; Diagnosis; Disclosure; Electronic Health Record; Enhancement Technology; Ensure; Environmental Risk Factor; Expert Opinion; Federally Qualified Health Center; Foundations; General Population; Genes; Genetic; Genomics; Goals; Health; Health system; Heart Diseases; Hispanic Populations; Individual; Ingestion; Intervention; Iron; Life; Link; Malignant Neoplasms; Measurement; Medicaid; Methods; Modeling; Opiate Addiction; Outcome; Participant; Patients; Patterns of Care; Persons; Phenotype; Prevention strategy; Privacy; Process; Prognosis; Recontacts; Recording of previous events; Reporting; Research; Research Personnel; Risk; Risk Assessment; Secure; Security; Site; Source; Standardization; Statistical Models; Stroke; Surveys; Terminology; Underrepresented Populations; Underserved Population; Uninsured; United States National Institutes of Health; Variant; analytical method; cloud based; community intervention; dashboard; data acquisition; data de-identification; data integration; data pipeline; data quality; data streams; design; environmental justice; experience; health data; improved; indexing; insight; interoperability; mortality; novel; patient stratification; precision medicine; privacy preservation; quality assurance; remediation; repaired; sexual minority; social factors; tool; treatment strategy; wearable device

ABSTRACT Precision medicine aims to accurately classify patients to improve diagnosis, intervention selection, and prognosis. The All of Us Research Program (AoURP) collects a diverse array of data types from participants, including surveys, electronic health records (EHRs), physical measurements, wearable devices, and biosamples, offering valuable insights into health trajectories. However, certain aspects of a patient’s life remain unrepresented in the collected data, which can limit the accuracy of research and care. To address this gap, we propose the creation of the All of Us Center for Linkage and Acquisition of Data (CLAD) to supplement existing data sources using passive data streams and deploy integration strategies to "put the patient back together again." This team brings together collective experience leading large initiatives involving data acquisition, linkage, harmonization, quality assurance, pipelines and platforms, governance, and security. We will design and implement a data collection, linkage, and integration strategy that lays a foundation for a variety of AoURP data linkages for identified, and de-identified data integration, including person-level linkages such as with mortality, residential history, and administrative claims, and geocoded data pipelines to enable linkages with the Environmental Justice Index. The CLAD will acquire and process new data linkages and geocoded data in a cloud-based Data Linkage Platform (DLP), guided by our experience formulating researcher-ready datasets with scientific utility. Our CLAD team will perform data quality assurance, repair, and standardization checks to ensure accuracy and robustness of data-driven research. This endeavor will align data with interoperability standards and clinical terminologies, extend them where necessary, and create a data quality dashboard for every data change and data health check Data Quality reports for each of the sources and sites. We will also explore new methods of clinical data acquisition from HINs to mitigate data missingness with a focus on underrepresented populations by comparing AoURP participant-linked ambulatory EHR data from OCHIN, which includes Medicaid and uninsured patients, with EHR data from health systems served by Datavant. Diverse CLAD sources and novel analytical methods, such as probabilistic models, will be used to reveal patterns of care and potential interventions for communities underrepresented in biomedical research.

摘要 精准医学旨在对患者进行准确分类，以改善诊断和干预 选择和预后。我们所有的研究计划（AoURP）收集了各种各样的 参与者的数据类型，包括调查，电子健康记录（EHR），物理 测量，可穿戴设备和生物样本，提供对健康的宝贵见解 轨迹然而，患者生活的某些方面在所收集的数据中仍然没有得到代表。 数据，这可能会限制研究和护理的准确性。为了弥补这一差距，我们建议 建立我们所有人数据链接和采集中心（CLAD），以补充 使用被动数据流的现有数据源，并部署集成策略， 病人又回来了。“这个团队汇集了集体经验， 涉及数据获取、联系、协调、质量保证、管道和 平台、治理和安全。 我们将设计和实施一个数据收集、链接和集成策略， 为已识别和去识别数据的各种AoURP数据链接奠定基础 整合，包括人层面的联系，例如与死亡率、居住历史和 行政索赔和地理编码数据管道，以实现与环境 正义指数。拉丁美洲和加勒比区域发展中心将以一种新的方式获取和处理新的数据链接和地理编码数据， 基于云的数据链接平台（DLP），以我们制定 具有科学实用性的研究人员可用数据集。我们的CLAD团队将执行数据质量 保证、修复和标准化检查，以确保数据驱动的 research.这一奋进将使数据与互操作性标准和临床术语保持一致， 在必要时扩展它们，并为每个数据更改和数据创建数据质量仪表板 运行状况检查每个源和站点的数据质量报告。我们还将探索新的 从HIN采集临床数据的方法，以减少数据缺失，重点是 通过比较AoURP参与者相关的动态EHR数据， 来自OCHIN，其中包括医疗补助和无保险的患者， 由Datavant提供服务的系统。多样的CLAD来源和新颖的分析方法，如 概率模型，将用于揭示护理模式和潜在的干预措施， 在生物医学研究中代表性不足的社区。