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Project Summary, Data Analysis Core The Data Analysis Core provides end-to-end experimental and computational expertise: initial experimental design and power studies, ongoing data generation and analysis, and ultimate data deposition and sharing. The Data Analysis Core will support high-dimensional data generation and analysis for the Organ Specific Project, including multi-omics data integration methods at distinct biological scales. This Core will collaborate closely with the HuBMAP HIVE to harmonize data and pipelines to enable meta-analyses across tissues. Core Leaders will participate in the monthly Center Executive Committee meetings with the Organ Specific Project Lead and Consortium meetings to ensure ample experimental support and computational resources for new research directions and collaborations with HuBMAP. The Core will have a designated Project Manager and Data Manager to assist with data standards and harmonization, data validation, data wrangling, and overall data deposition, data and software sharing, and genomic data sharing with the HIVE. In summary, the Data Analysis Core will support the overall research objectives by providing robust, reproducible experimental protocols and computational methods to characterize the impact of skin location, sex, race, and aging on the cellular and molecular changes to skin; to analyze spatial and temporal data to infer interactions and crosstalk between cell types; and to integrate our atlas of three-dimensional multi-omics skin datasets with the HIVE to promote cross- tissue analyses in the HuBMAP Consortium.
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Data infrastructure for single-cell multiplex imaging in Bioconductor
  • 批准号:
    10831240
  • 项目类别:
  • 资助金额:
    $9.58万
  • 财政年份:
    2022
  • 负责人:
    Sashank K Reddy
  • 依托单位:
3D Multiscale Reference Atlas for Human Skin
  • 批准号:
    10708873
  • 项目类别:
  • 资助金额:
    $50.0万
  • 财政年份:
    2022
  • 负责人:
    Sashank K Reddy
  • 依托单位:
Data Analysis Core
  • 批准号:
    10531003
  • 项目类别:
  • 资助金额:
    $25.0万
  • 财政年份:
    2022
  • 负责人:
    Sashank K Reddy
  • 依托单位:
3D Multiscale Reference Atlas for Human Skin
  • 批准号:
    10531002
  • 项目类别:
  • 资助金额:
    $50.0万
  • 财政年份:
    2022
  • 负责人:
    Sashank K Reddy
  • 依托单位:
国内基金
海外基金
基于ATAC-seq与DNA甲基化测序探究染色质可及性对莲两生态型地下茎适应性分化的作用机制
利用ATAC-seq联合RNA-seq分析TOP2A介导的HCC肿瘤细胞迁移侵 袭的机制研究
  • 批准号:
  • 项目类别:
    省市级项目
  • 资助金额:
    --
  • 批准年份:
    2024
  • 负责人:
    柳静
  • 依托单位:
面向图神经网络ATAC-seq模体识别的最小间隔单细胞聚类研究
  • 批准号:
    62302218
  • 项目类别:
    青年科学基金项目
  • 资助金额:
    30.00万元
  • 批准年份:
    2023
  • 负责人:
    张双全
  • 依托单位:
基于ATAC-seq策略挖掘穿心莲基因组中调控穿心莲内酯合成的增强子