Data Analysis Core
Data Analysis Core
批准号:
10708874
负责人:
Sashank K Reddy
金额:
$25.0万
依托单位:
依托单位国家:
美国
项目类别:
财政年份:
2022
资助国家:
美国
项目状态:
已结题
起止时间:
2022-09-26 至 2024-08-31
关键词:
3-DimensionalATAC-seqAdherenceAdoptedAgeAgingAtlasesBenchmarkingBiologicalCellsChromatinCollaborationsCollectionComputer AnalysisComputer softwareComputing MethodologiesDataData AnalysesData SetEnsureExperimental DesignsFAIR principlesGenerationsGenetic TranscriptionGenomicsGoalsHumanHuman BioMolecular Atlas ProgramHuman bodyImageImaging technologyIndividualInfrastructureLeadLearningLocationMapsMeta-AnalysisMethodsMolecularMolecular ProfilingMultiomic DataOrganProteomicsProtocols documentationRaceReproducibilityResearchResolutionResource SharingSex DifferencesSkinStandardizationTechniquesTechnologyThree-Dimensional ImagingTissue imagingTissuesValidationage groupanalysis pipelinecell typecomputing resourcesdata harmonizationdata integrationdata sharingdata standardsdata submissiondata wranglingepigenomicsgenomic datahigh throughput analysishuman tissueimaging modalityimaging platforminteroperabilitymeetingsmultidimensional datamultiple omicsracial differenceracial populationsenescencesexsingle-cell RNA sequencingsynergismtissue mappingtranscriptomicstransfer learning
中文摘要
点击翻译按钮获取中文摘要
英文摘要
Project Summary, Data Analysis Core
The Data Analysis Core provides end-to-end experimental and computational expertise: initial experimental
design and power studies, ongoing data generation and analysis, and ultimate data deposition and sharing. The
Data Analysis Core will support high-dimensional data generation and analysis for the Organ Specific Project,
including multi-omics data integration methods at distinct biological scales. This Core will collaborate closely with
the HuBMAP HIVE to harmonize data and pipelines to enable meta-analyses across tissues. Core Leaders will
participate in the monthly Center Executive Committee meetings with the Organ Specific Project Lead and
Consortium meetings to ensure ample experimental support and computational resources for new research
directions and collaborations with HuBMAP. The Core will have a designated Project Manager and Data Manager
to assist with data standards and harmonization, data validation, data wrangling, and overall data deposition,
data and software sharing, and genomic data sharing with the HIVE. In summary, the Data Analysis Core will
support the overall research objectives by providing robust, reproducible experimental protocols and
computational methods to characterize the impact of skin location, sex, race, and aging on the cellular and
molecular changes to skin; to analyze spatial and temporal data to infer interactions and crosstalk between cell
types; and to integrate our atlas of three-dimensional multi-omics skin datasets with the HIVE to promote cross-
tissue analyses in the HuBMAP Consortium.
期刊论文(0)
专著(0)
科研奖励(0)
会议论文
Data infrastructure for single-cell multiplex imaging in Bioconductor
-
批准号:10831240
-
项目类别:
-
资助金额:$9.58万
-
财政年份:2022
-
负责人:Sashank K Reddy
-
依托单位:
3D Multiscale Reference Atlas for Human Skin
-
批准号:10708873
-
项目类别:
-
资助金额:$50.0万
-
财政年份:2022
-
负责人:Sashank K Reddy
-
依托单位:
Data Analysis Core
-
批准号:10531003
-
项目类别:
-
资助金额:$25.0万
-
财政年份:2022
-
负责人:Sashank K Reddy
-
依托单位:
3D Multiscale Reference Atlas for Human Skin
-
批准号:10531002
-
项目类别:
-
资助金额:$50.0万
-
财政年份:2022
-
负责人:Sashank K Reddy
-
依托单位:
国内基金
海外基金
登录
查看更多内容
基于ATAC-seq与DNA甲基化测序探究染色质可及性对莲两生态型地下茎适应性分化的作用机制
-
批准号:
-
项目类别:省市级项目
-
资助金额:--
-
批准年份:2024
-
负责人:
-
依托单位:
利用ATAC-seq联合RNA-seq分析TOP2A介导的HCC肿瘤细胞迁移侵
袭的机制研究
-
批准号:
-
项目类别:省市级项目
-
资助金额:--
-
批准年份:2024
-
负责人:柳静
-
依托单位:
面向图神经网络ATAC-seq模体识别的最小间隔单细胞聚类研究
-
批准号:62302218
-
项目类别:青年科学基金项目
-
资助金额:30.00万元
-
批准年份:2023
-
负责人:张双全
-
依托单位:
基于ATAC-seq策略挖掘穿心莲基因组中调控穿心莲内酯合成的增强子
-
批准号:--
-
项目类别:地区科学基金项目
-
资助金额:33万元
-
批准年份:2022
-
负责人:黄铭坤
-
依托单位:
基于单细胞ATAC-seq技术的C4光合调控分子机制研究
-
批准号:32100438
-
项目类别:青年科学基金项目(C类)
-
资助金额:30.0万元
-
批准年份:2021
-
负责人:涂晓雨
-
依托单位:
基于ATAC-seq技术研究交叉反应物质197调控TFEB介导的自噬抑制子宫内膜异位症侵袭的分子机制
-
批准号:82001520
-
项目类别:青年科学基金项目
-
资助金额:24.0万元
-
批准年份:2020
-
负责人:汤小晗
-
依托单位:
靶向治疗动态调控肺癌细胞DNA可接近性的ATAC-seq分析
-
批准号:81802809
-
项目类别:青年科学基金项目
-
资助金额:21.0万元
-
批准年份:2018
-
负责人:蔡梅春
-
依托单位:
运用ATAC-seq技术分析染色质可接近性对犏牛初级精母细胞基因表达的调控作用
-
批准号:31802046
-
项目类别:青年科学基金项目
-
资助金额:27.0万元
-
批准年份:2018
-
负责人:张龚炜
-
依托单位:
基于ATAC-seq高精度预测染色质相互作用的新方法和基于增强现实的3D基因组数据可视化
-
批准号:31871331
-
项目类别:面上项目
-
资助金额:59.0万元
-
批准年份:2018
-
负责人:张治华
-
依托单位:
基于ATAC-seq和RNA-seq研究CWIN调控采后番茄果实耐冷性作用机制
-
批准号:31801915
-
项目类别:青年科学基金项目
-
资助金额:24.0万元
-
批准年份:2018
-
负责人:茹磊
-
依托单位: