3'-O-Modified Nucleotide Reversible Terminators for Pyrosequencing

描述(由申请人提供)：微型设备中的焦磷酸测序已被证明在基因组测序中有广泛的应用。然而，使用天然核苷酸的焦磷酸测序在准确破译DNA模板的同源多聚体区域方面存在固有的困难。这项提议的目标是设计和合成一个可逆核苷酸终止子文库来解决这个问题。目标如下：(1)设计和合成4个3‘-O-烯丙基标记核苷酸，分别对应于A、C、G、T，作为焦磷酸测序的可逆终止子。我们已经生产了少量纯度足够高的4个3‘-O-烯丙基标记的核苷酸，并证明它们可以用于焦磷酸测序，从而在DNA的均聚体区域产生准确的测序数据。我们将进一步优化酶促条件，以增加焦磷酸测序的读取长度；(2)设计和合成可光切的3‘-O-烯丙基修饰的核苷酸可逆终止子，与3’-O-烯丙基标记的核苷酸进行比较，以进一步优化焦氧测序平台的准确性和读取长度；(3)评价不同微米尺寸的小球，以固定化与光切割或化学切割条件兼容的DNA模板，使用上述优化的一套可逆核苷酸终止子进行焦解测序。这里开发的分子工具将促进焦化测序的优化，以获得生物和生物医学应用中无与伦比的精确度。

DESCRIPTION (provided by applicant): Pyrosequencing in a miniaturized device has been shown to have wide applications in genome sequencing. However, pyrosequencing with natural nucleotides has inherent difficulty in accurately deciphering the homopolymeric regions of DNA templates. The goal of this proposal is to design and synthesize a library of reversible nucleotide terminators to address this issue. The following three aims will be pursued: (1) Design and synthesis of four 3'-O-allyl-labeled nucleotides corresponding to A, C, G, T, as reversible terminators for pyrosequencing. We have produced small quantity of four 3'-O-allyl-labeled nucleotides in sufficient purity and have demonstrated that they can be used for pyrosequencing to produce accurate sequencing data in homopolymeric regions of DNA. We will further optimize the enzymatic conditions to increase the read length of pyrosequencing using the 3'-O-allyl-labeled nucleotides; (2) Design and synthesis of photocleavable 3'-O-modified nucleotide reversible terminators to compare with the 3'-O-allyl-labeled nucleotides to further optimize the pyrosequencing platform in terms of accuracy and readlength; (3) Evaluation of different micron-sized beads to immobilize the DNA template that are compatible to photocleavage or chemical cleavage conditions to perform pyrosequencing using the optimized set of reversible nucleotide terminators developed above. The molecular tools developed here will facilitate the optimization of pyrosequencing for de novo genome sequencing with unparalleled accuracy for biological and biomedical applications.