AUTOMATED REFINEMENT OF IMAGE STACKS
AUTOMATED REFINEMENT OF IMAGE STACKS
批准号:
8364262
负责人:
ART WETZEL
金额:
$0.11万
依托单位国家:
美国
项目类别:
财政年份:
2011
资助国家:
美国
项目状态:
已结题
起止时间:
2011-09-15 至 2013-07-31
关键词:
3-DimensionalBiologicalBiomedical ResearchCaenorhabditis elegansCollaborationsData AnalysesData SetEmbryoFundingGrantHigh Performance ComputingImageImageryInvestigationNational Center for Research ResourcesPrincipal InvestigatorResearchResearch InfrastructureResolutionResourcesSliceSourceSpecimenThickTissuesUnited States National Institutes of HealthUniversitiesWorkabstractingcostegg
中文摘要
该子项目是利用资源的众多研究子项目之一
由 NIH/NCRR 资助的中心拨款提供。子项目的主要支持
并且子项目的主要研究者可能是由其他来源提供的,
包括其他 NIH 来源。 子项目可能列出的总成本
代表子项目使用的中心基础设施的估计数量,
NCRR 赠款不直接向子项目或子项目工作人员提供资金。
关键词:
体量数据分析,
可视化和分发协作
摘要:
理查德·费特 (Richard Fetter) 在洛克菲勒大学巴格曼实验室工作,
收集了完整的跃迁发射显微照片 (TEM) 体积数据集
在 3 倍胚胎 C. Elegans 上,包括卵壳。第 825 章
切片厚度为 50 nm,切片内分辨率为 5 nm,结果
每个切片的大小为 5000x6000 像素。总体积数据集为 25
GB。此次合作涉及自动化的研究
通过连续切片获得的图像堆栈的对齐
生物标本通过消除图像失真,这将允许
任意观察和分析组织的 3 维体积
方向。
英文摘要
This subproject is one of many research subprojects utilizing the resources
provided by a Center grant funded by NIH/NCRR. Primary support for the subproject
and the subproject's principal investigator may have been provided by other sources,
including other NIH sources. The Total Cost listed for the subproject likely
represents the estimated amount of Center infrastructure utilized by the subproject,
not direct funding provided by the NCRR grant to the subproject or subproject staff.
Keywords:
Volume data analysis,
visualization and distribution collaboration
Abstract:
Richard Fetter, working in Bargman's lab at Rockefeller University, has
collected a full transition emission micrograph (TEM) volumetric dataset
on a 3-Fold embryo C. Elegans, including the egg case. Each of the 825
slices is 50 nm thick with in-slice resolution being 5 nm, which results
in each slice being 5000x6000 pixels. The total volumetric dataset is 25
GBytes. This collaboration involves the investigation of automated
alignment of image stacks obtained through serial sectioning of
biological specimens by removing image distortion which will allow a
3-dimensional volume of tissue to be viewed and analyzed in arbitrary
orientations.
期刊论文(0)
专著(0)
科研奖励(0)
会议论文
VISIBLE MOUSE EMBRYO DEVELOPMENT AND GENE EXPRESSION
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批准号:8364246
-
项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
ASSEMBLY & ANALYSIS OF SSTEM STACKS FOR VISUAL CORTEX CIRCUIT STUDIES
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批准号:8364175
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项目类别:
-
资助金额:$2.53万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
CONNECTOME PROJECT DATA MANAGEMENT AND IMAGE ASSEMBLY WITH CLAY REID
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批准号:8364226
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项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
CORE 2006-2011: DISTRIBUTED SERVER TECHNOLOGY FOR THE PSC VOLUME BROWSER
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批准号:8364275
-
项目类别:
-
资助金额:$6.88万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
ALIGNMENT WARPING TILING AND ANALYSIS OF ELECTRON MICROGRAPHS
-
批准号:8364178
-
项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
VISIBLE HUMAN
-
批准号:8364266
-
项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
4D MOUSE
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批准号:8364261
-
项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
ASSEMBLY, ANALYSIS AND DISTRIBUTION OF SERIAL-SECTION VOLUMETRIC
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批准号:8364279
-
项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
VISIBLE HUMAN APPLICATIONS USING THE PSC VOLUME BROWSER
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批准号:8364280
-
项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
LUNG SEGMENTATION
-
批准号:8364264
-
项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
VOLUME BROWSER AS A TEACHING TOOL
-
批准号:8364263
-
项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
ASSEMBLY OF SSTEM STACKS FOR C ELEGANS STUDIES (HALL AND EMMONS)
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批准号:8364174
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项目类别:
-
资助金额:$2.53万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
FLUORESCENT DIFFUSE OPTICAL TOMOGRAPHY
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批准号:8364184
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项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
COMPUTATIONAL IMAGING OF ECM DURING AVIAN HEART MORPHOGENESIS
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批准号:8364164
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项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
PSC COLLABORATION: ANALYSIS, VISUALIZATION AND DISTRIBUTION OF 4D BIOLOGICAL DA
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批准号:8364278
-
项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
CREATION OF A PROBABILISTIC ATLAS
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批准号:8364256
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项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
AUTOMATED METHODS TO IDENTIFY PATTERNS OF FEATURES BETWEEN CELL TYPES
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批准号:8364267
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项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
VISIBLE KOREAN HUMAN
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批准号:8364265
-
项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:ART WETZEL
-
依托单位:
VOLUME BROWSER AS A TEACHING TOOL
-
批准号:8171841
-
项目类别:
-
资助金额:$0.14万
-
财政年份:2010
-
负责人:ART WETZEL
-
依托单位:
AUTOMATED METHODS TO IDENTIFY PATTERNS OF FEATURES BETWEEN CELL TYPES
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批准号:8171845
-
项目类别:
-
资助金额:$0.14万
-
财政年份:2010
-
负责人:ART WETZEL
-
依托单位:
海外基金