Gene Mutation and Rescue in Human Diaphragmatic Hernia
Gene Mutation and Rescue in Human Diaphragmatic Hernia
批准号:
10596873
负责人:
Wendy K Chung
金额:
$37.45万
依托单位国家:
美国
项目类别:
财政年份:
2011
资助国家:
美国
项目状态:
已结题
起止时间:
2011-08-29 至 2024-04-30
关键词:
Administrative SupplementBioinformaticsBostonCOVID-19ChildClinicalClinical ManagementCollaborationsCollectionCommunitiesCongenital AbnormalityCongenital diaphragmatic herniaConsentDataData AnalysesDiaphragmatic HerniaEnrollmentFamilyFamily memberFoundationsFutureGene ExpressionGene MutationGeneral HospitalsGeneticGenetic DiseasesGenetic Predisposition to DiseaseGenetic studyGenomicsGoalsHealth Care CostsHumanInfrastructureInstitutesInstitutional Review BoardsInternationalLinkLung diseasesMassachusettsMedical RecordsMolecularNational Institute of Child Health and Human DevelopmentNew YorkOutcomeParticipantPatient RecruitmentsPatientsPennsylvaniaPhenotypeResearchResearch PersonnelResearch SupportResourcesSeveritiesSpecificitySpecimenSpecimen HandlingStructural Congenital AnomaliesTherapeuticTranslatingUniversitiesclinical centerclinical phenotypeclinical prognosiscohortcomorbiditydata managementdata preservationdatabase of Genotypes and Phenotypesexperiencefollow-upgenetic variantgenomic datahuman subjectimprovedmortalityphenotypic dataposterspreservationprogramsrecruitrisk variantsuccesstranscriptomics
中文摘要
2P01-HD068250行政补编
摘要:
先天性横隔疝(CDH)是一种常见的出生缺陷,需要相当大的基础设施来治疗
创建和维护多机构的单一IRBs,招募,临床特征,获得,处理,
并在患者身上维持生物显微镜,研究中心在马萨诸塞州总医院,
波士顿儿童医院和纽约哥伦比亚大学来自16个不同的临床中心。经过精心磨练的
患者、样本和数据的基础设施是该计划项目成功的基础
研究遗传因素对结构性出生的影响
缺陷,CDH。我们已经建立了世界上规模最大、特征最仔细的CDH队列之一,
这份行政副刊旨在保留这一点。总的来说,我们已经招募了2045名患者
CDH和3662名未受影响的家庭成员,正在进行的招募预计将招收100-150人
行政补编期间每年的病人和家属人数,这将支持后续工作
招募和同意参与者,继续收集和组织广泛的表型数据
包括回顾性病历审查和纵向临床随访、随访收集和
保存现有生物标本的标本处理和高质量的数据管理
基因组和表型数据的生物信息学分析和注释。这些数据已由
哈佛大学和麻省理工学院的布罗德研究所,但尚未由哈佛大学的数据发布资源发布
宾夕法尼亚州。然后必须分析这些数据,然后与DBGaP和Gabriella Miller Kid的第一个程序共享
为这一宝贵资源保存数据和标本的门户网站。人类受试者的详细表型
将有助于解释由我们和其他研究人员得出的数据
社区。保护后代的资源是我们最重要的目标,因为我们已经投入了大量的资金
专业知识和NICHD在结构诞生的赞助下向该项目投资了数百万美元
NICHD的缺陷计划。
英文摘要
ADMINISTRATIVE SUPPLEMENT TO 2P01-HD068250
ABSTRACT:
Congenital diaphragmatic hernia (CDH) is a common birth defect, which requires considerable infrastructure for
creating and maintaining multi-institutional single IRBs, recruiting, clinically characterizing, obtaining, processing,
and maintaining biospecimens on patients, with research centered at the Massachusetts General Hospital,
Boston Children’s, and Columbia University, New York from 16 different clinical centers. The carefully honed
infrastructure for patients, specimens, and data is the foundation for the success of this Program Project, “Gene
Mutation and Rescue in Human Diaphragmatic Hernia”, to study genetic contributions to the structural birth
defect, CDH. We have established one of the largest and most carefully characterized CDH cohorts in the world,
which this Administrative Supplement aims to preserve. Collectively, we have already enrolled 2045 patients with
CDH and 3662 unaffected family members, and ongoing recruitment has been expected to enroll 100 – 150
patients and families per year over the course of the Administrative Supplement, which will support the follow on
recruitment and consent of participants, the continued collection and organization of extensive phenotypic data
including retrospective medical record review and longitudinal clinical followup, follow on collection and
processing of specimens with preservation of existing biospecimens, and data management by high quality
bioinformatic analyses and annotation of genomic and phenotyping data. The data has been sequenced by the
Broad Institute of Harvard and MIT but not yet released by the Data Release Resource at the University of
Pennsylvania. This data must then be analyzed, then shared with dbGAP and Gabriella Miller Kid’s First Program
portals to preserve data and specimens for this precious resource. The detailed phenotyping of human subjects
will be instrumental in the interpretation of data derived by us and other investigators of the broad research
community. Protecting the resource for posterity is uppermost in our Aims since we have invested considerable
expertise and NICHD has invested millions of dollars into this Project under the auspices of the Structural Birth
Defects Program of the NICHD.
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DOI:
10.1038/nmeth.4083
发表时间:
2017-01
期刊:
Nature methods
影响因子:
48
作者:
[Li T, Wernersson R, Hansen RB, Horn H, Mercer J, Slodkowicz G, Workman CT, Rigina O, Rapacki K, Stærfeldt HH, Brunak S, Jensen TS, Lage K]
通讯作者:
Lage K
DOI:
10.1371/journal.pone.0149425
发表时间:
2016
期刊:
PloS one
影响因子:
3.7
作者:
[Sanford EL, Choy KW, Donahoe PK, Tracy AA, Hila R, Loscertales M, Longoni M]
通讯作者:
Longoni M
DOI:
--
发表时间:
2022
期刊:
FASEB journal : official publication of the Federation of American Societies for Experimental Biology
影响因子:
--
作者:
[Sun,Xin]
通讯作者:
Sun,Xin
DOI:
10.1002/ajmg.a.35665
发表时间:
2012-12
期刊:
AMERICAN JOURNAL OF MEDICAL GENETICS PART A
影响因子:
2
作者:
[Longoni, Mauro, Lage, Kasper, Russell, Meaghan K., Loscertales, Maria, Abdul-Rahman, Omar A., Baynam, Gareth, Bleyl, Steven B., Brady, Paul D., Breckpot, Jeroen, Chen, Chih P., Devriendt, Koenraad, Gillessen-Kaesbach, Gabriele, Grix, Arthur W., Rope, Alan F., Shimokawa, Osamu, Strauss, Bernarda, Wieczorek, Dagmar, Zackai, Elaine H., Coletti, Caroline M., Maalouf, Faouzi I., Noonan, Kristin M., Park, Ji H., Tracy, Adam A., Lee, Charles, Donahoe, Patricia K., Pober, Barbara R.]
通讯作者:
Pober, Barbara R.
DOI:
10.1016/j.celrep.2012.07.006
发表时间:
2012-08-30
期刊:
Cell reports
影响因子:
8.8
作者:
[Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV]
通讯作者:
Olsen JV
共 8 条
Fair Phenotype Annotation and Genomic Reinterpretation
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批准号:10675315
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项目类别:
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资助金额:$88.64万
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负责人:Wendy K Chung
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依托单位:
Prospective Genetic Risk Evaluation and Assessment (PROGRESS) in Autism
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资助金额:$237.05万
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财政年份:2022
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资助金额:$40.05万
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财政年份:2022
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负责人:Wendy K Chung
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依托单位:
Core A: Administrative Core
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批准号:10698072
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项目类别:
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资助金额:$16.03万
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财政年份:2022
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负责人:Wendy K Chung
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依托单位:
Identifying and applying genetic variation relevant to clinical outcomes for individuals with congenital heart disease
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批准号:10028016
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项目类别:
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资助金额:$47.04万
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负责人:Wendy K Chung
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依托单位:
Role of the Kinesin KIF1A in Neurological Disease
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批准号:10328907
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资助金额:$64.13万
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财政年份:2020
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依托单位:
Molecular Biology/Molecular Genetics (Core C)
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批准号:9901512
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资助金额:$22.94万
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财政年份:2020
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Role of the Kinesin KIF1A in Neurological Disease
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Identifying and applying genetic variation relevant to clinical outcomes for individuals with congenital heart disease
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Identifying and applying genetic variation relevant to clinical outcomes for individuals with congenital heart disease
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依托单位:
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批准号:10647822
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Developmental Mechanisms of Trachea-Esophageal Birth Defects
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Developmental Mechanisms of Trachea-Esophageal Birth Defects
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Molecular Biology/Molecular Genetics (Core C)
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资助金额:$21.04万
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财政年份:2017
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依托单位:
CLEAR Consortium: Discovering the Developmental Mechanisms of Trachea-Esophageal Birth Defects
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项目类别:
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资助金额:$163.99万
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EHR-based Genomic Risk Assessment and Management for Diverse Populations
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