A Public Database Linking Protein Structure and Sequence Mutation Data
A Public Database Linking Protein Structure and Sequence Mutation Data
批准号:
0111710
负责人:
Philip Bourne
金额:
$54.27万
依托单位国家:
美国
项目类别:
Continuing Grant
财政年份:
2001
资助国家:
美国
项目状态:
已结题
起止时间:
2001-08-01 至 2004-07-31
中文摘要
蛋白质突变作为进化过程的一部分,通过诱变和翻译后修饰发生。 迄今为止,还没有开发出允许系统研究所有这些突变对蛋白质结构和功能的影响的资源,尽管文献中充满了个别实例。 新资源将包含所有相关的PDB结构作为其起点,并将随PDB一起沿着更新。 在http://pmr.sdsc.edu上建立了一个原型。 生产资源将使用新的信息获取工具汇集序列、结构和文献信息,并为突变影响的全局分析提供查询和可视化工具。 通过利用该资源进行预测和方法验证,将促进蛋白质结构和工程的研究。 该资源可以通过网络访问,其他用户可以编写软件直接查询资源。
英文摘要
Protein mutation occurs as part of the evolutionary process, through mutagenesis and through post-translational modification. As yet no resource has been developed that permits the systematic study of the effect of all these mutations on protein structure, and hence function, even though the literature is full of individual instances. The new resource will contain all relevant PDB structures as its starting point and will be updated along with PDB. A prototype has been established at http://pmr.sdsc.edu. The production resource will bring together sequence, structure, and literature information using novel information acquisition tools and provide query and visualization tools for global analysis of the effects of mutation. Research in protein structure and engineering will be enhanced through using the resource for prediction and for confirmation of methods. The resource will be accessible through the web and other users may write software for doing direct querying of the resource.
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Conceptualization and Analysis of a 3D Virtual Cell
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批准号:1216893
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项目类别:Standard Grant
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资助金额:$62.58万
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财政年份:2012
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负责人:Philip Bourne
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依托单位:
SGER: SciTube.tv: Video Delivery of Papers Published in PLoS Journals
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批准号:0732706
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项目类别:Standard Grant
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资助金额:$0.0万
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财政年份:2007
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负责人:Philip Bourne
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依托单位:
CyberBridge
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批准号:0737714
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项目类别:Continuing Grant
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资助金额:$119.56万
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财政年份:2007
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负责人:Philip Bourne
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依托单位:
ISMB Conference Support for Students & Young Scientists
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批准号:0620405
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项目类别:Standard Grant
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资助金额:$4.0万
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财政年份:2006
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负责人:Philip Bourne
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依托单位:
BioLit: Open Source Tools for Integrating Biological Literature and Databases
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批准号:0544575
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项目类别:Continuing Grant
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资助金额:$95.35万
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财政年份:2006
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负责人:Philip Bourne
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依托单位:
ISMB Conference on June 25-29, 2005 in Detroit, Michigan. Support for Students & Young Scientists
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批准号:0505980
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项目类别:Standard Grant
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资助金额:$3.0万
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财政年份:2005
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负责人:Philip Bourne
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依托单位:
ISMB 2004 Conference Support for Students and Young Scientists, to be held in Glasgow, Scotland July 2004.
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批准号:0440678
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项目类别:Standard Grant
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资助金额:$5.52万
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财政年份:2004
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负责人:Philip Bourne
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依托单位:
VOLTAGE-GATED ION CHANNEL PROTEIN RESOURCE DATABASE
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批准号:0111709
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项目类别:Standard Grant
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资助金额:$24.0万
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财政年份:2001
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负责人:Philip Bourne
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依托单位:
A Public Database Resource for Apoptosis Research and Education
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批准号:0078731
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项目类别:Continuing Grant
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资助金额:$51.88万
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财政年份:2000
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负责人:Philip Bourne
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依托单位:
Molecular Interactive Collaborative Environment (MICE)
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批准号:9723475
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项目类别:Standard Grant
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资助金额:$45.01万
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财政年份:1997
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负责人:Philip Bourne
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依托单位:
A Portable Client-Server Data Management System for the Comparative Analysis of Proteins
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批准号:9630339
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项目类别:Standard Grant
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资助金额:$42.44万
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财政年份:1996
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负责人:Philip Bourne
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依托单位:
International Summer School on Macromolecular Crystallographic Computing being held at Western Washington University in Bellingham, WA., August 16-22, 1996
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批准号:9529557
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项目类别:Standard Grant
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资助金额:$0.5万
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财政年份:1996
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负责人:Philip Bourne
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依托单位:
Continued Development of a Software Framework to Maintain and Query Features of Biological Macromolecules
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批准号:9507625
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项目类别:Standard Grant
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资助金额:$14.1万
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财政年份:1995
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负责人:Philip Bourne
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依托单位:
CIFters: Object Oriented Tools for Manipulating Crystallographic Information Files (CIF)
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批准号:9310154
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项目类别:Continuing Grant
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资助金额:$39.19万
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财政年份:1993
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负责人:Philip Bourne
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依托单位:
An Object-Oriented Toolbox for Use with the Protein Data Bank (PDB)
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批准号:9116798
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项目类别:Continuing Grant
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资助金额:$114.68万
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财政年份:1992
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负责人:Philip Bourne
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依托单位:
海外基金