Molecular systematical Studies of Cupressaceae and Taxodiaceae using DNA sequence information

利用 DNA 序列信息对柏科和杉科进行分子系统研究

基本信息

  • 批准号:
    11460073
  • 负责人:
  • 金额:
    $ 9.28万
  • 依托单位:
  • 依托单位国家:
    日本
  • 项目类别:
    Grant-in-Aid for Scientific Research (B).
  • 财政年份:
    1999
  • 资助国家:
    日本
  • 起止时间:
    1999 至 2000
  • 项目状态:
    已结题

项目摘要

The molecular evolution of two families, Cupressaceae and Taxodiaceae, was elucidated using DNA sequence information on four chloroplast DNA genes, atpA, petA, rbcL, and rpo3. The principal results are as follows :(1) The molecular phylogeny of families Cupressaceae and Taxodiaceae revealed that they consisted of five clades and that family Cupressaceae was comprised within family Taxodiaceae.(2) In petA gene, the sequence polymorphism was recognized between Chamaecyparis obtusa and C.obtusa var. formosana. Using this information, the two species came to be identified correctly.(3) In the phylogeny of the genus Chamaecyparis, Alaska cypress (Chamaecyparis nootkatensis) was distant-related from the remaining six species/variety phylogenetically. This genus was divided into three clades.(4) The hybridity of Leyland cypress (x Cupressocyparis leylandii) was verified based on DNA information. We found the molecular evidence that the nucleic genome of Leyland cypress originated from Monterey cypress (Cupressus macrocarpa) and Alaska cypress in the Cupressaceae and that this species is of hybrid origin.(5) Systematical position of Alaska cypress was predicted in the genus Chamaecyparis. A new finding that this species should be classified as a member of the genus Cupressus was revealed based on molecular phylogenetic trees.(6) The family Cupressaceae was divided into two monophylic clades distributed in the northern hemisphere and the southern hemisphere. The genera of the southern hemisphere diverged at first. The genera Thujopsis and Thuja secondary separated, and the genera Cupresus and Juniperus were newly formed.(7) The genus Callitris was the latest-diverged in family Cupressaceae and the species of this genus was radiated in a relatively short term.
利用叶绿体atpA、petA、rbcL和rpo 3基因的DNA序列信息,阐明了柏科和杉科两个科的分子进化。主要结果如下:(1)柏科和杉科的分子系统学研究表明,柏科和杉科由5个分支组成,柏科是杉科的一个分支。(2)在petA基因上,钝头Chamaparis obtusa和钝头Chamaparis var.福尔摩沙。利用这些信息,这两个物种被正确识别。(3)在Chamaaparis属的亲缘关系中,阿拉斯加柏树(Chamaaparis nootkatensis)与其余6个物种/变种的亲缘关系较远。该属分为三个分支。(4)利用DNA信息对莱兰柏(Cupressocyparis leylandii)的杂种关系进行了验证。我们发现了莱兰柏的核基因组起源于柏科的蒙特里柏(Cupressus macrocarpa)和阿拉斯加柏(Alaska cypress)的分子证据,证明该种为杂种起源。(5)预测了阿拉斯加扁柏在Chama-paris属中的系统位置。通过分子系统发育树分析,发现该种应归属于柏木属。(6)柏科分为两个单系分支,分布于北方和南半球。南半球的属起初是分歧的。崖柏属和崖柏属是次生分离的,柏属和圆柏属是新形成的。(7)水杨梅属是柏科中分化最晚的一个属,其种类的辐射时间较短。

项目成果

期刊论文数量(53)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
Isoda, K., Shiraishi, S.: "Identification of chloroplast DNA haplotypes of Abies firma and A.homolepis using a polymerase chain reaction with species-specific primers."J.For.Res.. 4. 291-294 (1999)
Isoda, K., Shiraishi, S.:“使用物种特异性引物的聚合酶链式反应鉴定冷杉和同型冷杉的叶绿体 DNA 单倍型。”J.For.Res.. 4. 291-294 (1999)
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Isoda, K., Shiraishi, S., Watanabe, S., Kitamura, K.: "Molecular evidence of natural hybridization between Abies veitchii and A.homolepis (Pinaceae) revealed by chloroplast, mitochondrial and nuclear DNA markers."Mol.Ecol.. 9. 1965-1974 (2000)
Isoda, K.、Shiraishi, S.、Watanabe, S.、Kitamura, K.:“通过叶绿体、线粒体和核 DNA 标记揭示冷杉和 A.homolepis(松科)之间自然杂交的分子证据。”Mol.Ecol
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Naoko Yamaguchi: "Molecular evidence of the hybrid origins of Leyland cypress (xCupressocyparis leylandii)"Journal of Forest Research. 5. 35-38 (2000)
Naoko Yamaguchi:“利兰柏 (xCupressocyparis leylandii) 杂交起源的分子证据”森林研究杂志。
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    0
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Yamaguchi,N.,Shiraishi,S.,Sasaki.Y.,and Yamamoto.C.: "Moleccular Evidence of the Hybrid Origins of Leyland Cypress(x Cupressocyparis leylandii)"Jounal of Foresut Research. 5(1)(印刷中). (2000)
Yamaguchi, N.、Shiraishi, S.、Sasaki. 和 Yamamoto C.:“Leyland Cypress (x Cupressocyparis leylandii) 杂交起源的分子证据”Foresut 研究杂志 5(1)(出版中)。 (2000)
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    0
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Isoda,K.: "Allelic sequence polymorphisms in the intron region of the nuclear-encoded GapC gene preceded the speciation of the three closely related Abies species (Pinaceae)"Theor.Appl.Genet.. 102. 244-250 (2001)
Isoda,K.:“核编码的 GapC 基因内含子区域的等位基因序列多态性先于三个密切相关的冷杉物种(松科)的物种形成”Theor.Appl.Genet.. 102. 244-250 (2001)
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SHIRAISHI Susumu其他文献

SHIRAISHI Susumu的其他文献

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{{ truncateString('SHIRAISHI Susumu', 18)}}的其他基金

A simple sequencing system of complete chloroplast genome using long PCR and NGS in coniferous species
在针叶树种中使用长 PCR 和 NGS 的完整叶绿体基因组的简单测序系统
  • 批准号:
    25660124
  • 财政年份:
    2013
  • 资助金额:
    $ 9.28万
  • 项目类别:
    Grant-in-Aid for Challenging Exploratory Research
A simple system for developing the microsatellite markers using RSE-PCR and pyrosequencing
使用 RSE-PCR 和焦磷酸测序开发微卫星标记的简单系统
  • 批准号:
    24658138
  • 财政年份:
    2012
  • 资助金额:
    $ 9.28万
  • 项目类别:
    Grant-in-Aid for Challenging Exploratory Research
A new feed profiling using DNA information for wild-herbivores
利用野生食草动物 DNA 信息进行新的饲料分析
  • 批准号:
    22658050
  • 财政年份:
    2010
  • 资助金额:
    $ 9.28万
  • 项目类别:
    Grant-in-Aid for Challenging Exploratory Research
Global transcriptome analysis of the pine wilt disease and application to the resistance breeding
松材线虫病全转录组分析及其在抗性育种中的应用
  • 批准号:
    21380100
  • 财政年份:
    2009
  • 资助金额:
    $ 9.28万
  • 项目类别:
    Grant-in-Aid for Scientific Research (B)
Constructing a new breeding system for afforestation CDM in tropical Acacia forestry
构建热带金合欢林造林CDM新型育种体系
  • 批准号:
    17208014
  • 财政年份:
    2005
  • 资助金额:
    $ 9.28万
  • 项目类别:
    Grant-in-Aid for Scientific Research (A)
Genetic mapping in Japanese coniferous tree species using microsatellite DNA markers
使用微卫星 DNA 标记对日本针叶树种进行遗传图谱分析
  • 批准号:
    13460070
  • 财政年份:
    2001
  • 资助金额:
    $ 9.28万
  • 项目类别:
    Grant-in-Aid for Scientific Research (B)
An evaluation system of resistance ability of Japanese black pine clones against pine wood nematode based on parentage diagnoses using DNA molecular markers
基于DNA分子标记亲子鉴定的黑松无性系抗松材线虫能力评价体系
  • 批准号:
    12556024
  • 财政年份:
    2000
  • 资助金额:
    $ 9.28万
  • 项目类别:
    Grant-in-Aid for Scientific Research (B)
Construction of a new improvement system using DNA molecular technique in the forest tree species
利用DNA分子技术构建森林树种新改良体系
  • 批准号:
    09556032
  • 财政年份:
    1997
  • 资助金额:
    $ 9.28万
  • 项目类别:
    Grant-in-Aid for Scientific Research (B)
Molecular systematical Studies of conifer using DNA sequence information
利用 DNA 序列信息对针叶树进行分子系统研究
  • 批准号:
    09460070
  • 财政年份:
    1997
  • 资助金额:
    $ 9.28万
  • 项目类别:
    Grant-in-Aid for Scientific Research (B)
A new identification system of sugi (Cryptomeria japonica) cultivars based on DNA typing
基于DNA分型的杉树品种新鉴定系统
  • 批准号:
    06556024
  • 财政年份:
    1994
  • 资助金额:
    $ 9.28万
  • 项目类别:
    Grant-in-Aid for Scientific Research (A)

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区域动物群的分子系统发育和物种形成
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