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Nuclear mechanobiology in confined migration

受限迁移中的核力学生物学

基本信息

批准号：
10350671
负责人：
Jan Lammerding
金额：
$ 31.42万
依托单位：
CORNELL UNIVERSITY
依托单位国家：
美国
项目类别：
财政年份：
2020
资助国家：
美国
起止时间：
2020-04-01 至 2024-02-29
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/10350671
关键词：
3-Dimensional Address Attention Biological Assay Blood Circulation Cell Cycle Progression Cell Line Cell Nucleus Cell Survival Cell physiology Cells Cellular Structures Characteristics Chromatin Clinical Collagen Complement Custom DNA DNA Damage DNA replication fork Data Development Distant Environment Event Exhibits Extracellular Matrix Face Fibroblasts Gene Expression Genetic Transcription Genome Stability Genomic DNA Genomics Goals Homeostasis Image Immune Immune response Immunofluorescence Immunologic Inflammatory Response Invaded Label Lead Mechanical Stress Mechanics Microfluidic Microchips Mitochondria Modeling Molecular Molecular Biology Molecular Conformation Molecular Genetics Neoplasm Metastasis Normal Cell Nuclear Nuclear Envelope Organelles Pathway interactions Physiological Physiological Processes Play Production Reactive Oxygen Species Reporter Reporting Research Role Rupture Site Stress System Therapeutic Time Tissues Variant base cancer cell cell motility cell type cellular imaging chromatin modification experimental study falls genome-wide genome-wide analysis improved in vivo insight interstitial live cell imaging migration neoplastic cell novel nuclease programs replication stress response senescence targeted treatment temporal measurement therapy resistant treatment response tumor progression tumorigenic wound healing

项目摘要

Project Summary Cell migration is essential for numerous physiological processes, including development, tissue homeostasis, and wound healing. At the same time, cell migration enables tumor cells to invade other tissues, enter/exit the circulation, and spread to distant sites in the body to form metastases. While these facts have motivated research on cell migration for many decades, one aspect that has only recently received attention is the physical challenge that cells face during migration in three-dimensional (3D) environments, and the resulting impact on cellular structure and function. In tissues, cells frequently move through tight spaces that require substantial deformation of the cell nucleus, which is the largest and stiffest organelle. The associated mechanical stress can result in nuclear envelope rupture, DNA damage, and changes in genomic organization. Many questions, however, remain, including the underlying molecular mechanisms, the functional consequences, and the variability across different cell lines. The central goal of this proposal is to identify the characteristic changes in chromatin organization associated with confined migration, determine the molecular mechanisms responsible for the mechanically-induced changes in chromatin organization and DNA damage, and assess the functional consequences of these events. To achieve this goal, we have developed novel experimental platforms that enable extended live-cell imaging of cells migrating through precisely-defined microenvironments while visualizing nuclear deformation, nuclear envelope rupture, DNA damage, and chromatin modifications. These platforms will be paired with molecular biology approaches and assays for genome-wide analysis of changes in 3D chromatin organization and gene expression in a panel of well-characterized cell lines representing both tumorigenic and non-tumorigenic cells. In the first aim, we will identify migration-induced changes in chromatin organization and gene expression, determine the molecular mechanisms responsible for altered chromatin organization, and assess the functional consequences of the altered chromatin organization. In the second aim, we will identify the molecular mechanisms for DNA damage during confined migration and determine the impact of migration-induced DNA damage on cell viability, cell cycle progression, and senescence. We will focus our studies on the earliest events resulting from altered chromatin organization and DNA damage, which we expect to exhibit less variation across multiple cell types than longer-term effects. Our ultimate goal is to uncover general principles in nuclear mechanobiology that will lead to an improved understanding of the impact of migration through tight spaces on cellular function and genomic stability, including the activation or suppression of specific transcriptional programs that may further enhance cell migration or modulate other cellular functions. Insights gained from these studies may help guide therapeutic approach for a variety of clinical conditions, from wound healing and immune-responses to therapies targeting metastatic tumor cells.

项目概要细胞迁移对于许多生理过程至关重要，包括发育、组织稳态、和伤口愈合。同时，细胞迁移使肿瘤细胞能够侵入其他组织，进入/退出循环，并扩散到体内较远的部位形成转移。虽然这些事实激发了研究关于细胞迁移数十年的研究，直到最近才受到关注的一个方面是物理挑战细胞在三维 (3D) 环境中迁移过程中所面临的问题，以及由此产生的对细胞的影响结构和功能。在组织中，细胞经常穿过需要大幅变形的狭小空间细胞核是最大、最坚硬的细胞器。相关的机械应力会导致核膜破裂、DNA 损伤和基因组组织变化。然而诸多疑问，仍然存在，包括潜在的分子机制、功能后果以及跨区域的变异性不同的细胞系。该提案的中心目标是确定染色质的特征变化与受限迁移相关的组织，确定负责的分子机制机械引起的染色质组织变化和 DNA 损伤，并评估这些事件的功能后果。为了实现这一目标，我们开发了新颖的实验能够对在精确定义的微环境中迁移的细胞进行扩展活细胞成像的平台同时可视化核变形、核膜破裂、DNA 损伤和染色质修饰。这些平台将与分子生物学方法和分析相结合，用于全基因组分析一组已充分表征的细胞系中 3D 染色质组织和基因表达的变化代表致瘤细胞和非致瘤细胞。在第一个目标中，我们将确定迁移引起的染色质组织和基因表达的变化，确定负责的分子机制改变的染色质组织，并评估改变的染色质组织的功能后果。在第二个目标中，我们将确定限制迁移和迁移过程中 DNA 损伤的分子机制。确定迁移诱导的 DNA 损伤对细胞活力、细胞周期进程和衰老的影响。我们将把研究重点放在染色质组织改变和 DNA 损伤引起的最早事件上，我们预计，与长期影响相比，多种细胞类型之间的变化会更小。我们的最终目标是揭示核力学生物学的一般原理，从而加深对核力学生物学的理解通过狭窄空间迁移对细胞功能和基因组稳定性的影响，包括激活或抑制可能进一步增强细胞迁移或调节其他功能的特定转录程序细胞功能。从这些研究中获得的见解可能有助于指导各种临床的治疗方法从伤口愈合和免疫反应到针对转移性肿瘤细胞的治疗。