Integrated Genomics Core

综合基因组核心

基本信息

批准号：
10458159
负责人：
Yufeng Shen
金额：
$ 25.63万
依托单位：
CINCINNATI CHILDRENS HOSP MED CTR
依托单位国家：
美国
项目类别：
财政年份：
2017
资助国家：
美国
起止时间：
2017-08-15 至 2027-05-31
项目状态：
未结题

来源：
https://reporter.nih.gov/project-details/10458159
关键词：
Address Animal Model Animals Binding Bioinformatics Biological Candidate Disease Gene Cardiac Cells ChIP-seq Child Chromatin Clinical Data Communities Computer Analysis Computing Methodologies Congenital Abnormality Copy Number Polymorphism Data Data Discovery Data Set Databases Defect Deposition Development Disease Endocytosis Epigenetic Process Esophagus Etiology Funding Gene Expression Profile Genes Genetic Genetic Transcription Genitourinary system Genome Genomics Genotype Goals Human Informatics Infrastructure Manuscripts Medical Genetics Neurologic Organoids PF4 Gene Parents Pathway interactions Patients Pediatric Research Phenotype Publications RNA analysis Registries Sample Size Services Set protein Single Nucleotide Polymorphism Statistical Data Interpretation Statistical Methods Syndrome Testing Trachea United States National Institutes of Health Variant Xenopus animal data base candidate identification causal variant cost effective data dissemination data integration data management data mining data sharing de novo mutation developmental genetics disorder risk exome exome sequencing experimental study functional genomics gastrointestinal genetic analysis genetic testing genetic variant genome analysis genome sequencing genomic data human data in silico induced pluripotent stem cell insertion/deletion mutation literacy model organisms databases multiple omics proband program dissemination programs public repository rare variant risk variant single-cell RNA sequencing success synergism trafficking transcription factor transcriptome sequencing whole genome

项目摘要

INTEGRATED GENOMICS CORE | PROJECT SUMMARY The aim of the CLEAR Consortium’s Integrated Genomics Core is to facilitate synergy between the different projects and accelerate the program by providing a comprehensive, cost effective and highly integrated suite of genomic services used by all three Projects. Project 1 performs genome/exom sequencing of patient-parent trios to identify putative TED-causing variants, and has established the CLEAR registry a database that integrates genomic and clinical data. Projects 2 and 3 will perform experiments with single cells RNA-seq and ChIP-seq analyses to define the genomic basis of normal and disrupted TE development in animal models and human iPSC-derived organoids. The Core will used state-of-the-art bioinformatics, computational and statistical methods to analyze and integrate of all this genomic data. The core provides statistical rigor, supports bioinformatics literacy of the wet bench teams, provides data management, and facilitates data sharing between the projects and broader scientific community.

综合基因组学核心|项目摘要 Clear Consortium综合基因组核心的目的是促进协同作用在不同的项目之间，通过提供全面的成本来加速该计划所有三个项目都使用的有效且高度集成的基因组服务套件。项目1 对患者 - 父母三重奏进行基因组/EXOM测序，以识别假定的TED引起变体，并建立了清晰的注册表，该数据库集成了基因组和临床数据。项目2和3将对单细胞RNA-seq和ChIP-Seq进行实验分析以定义动物模型中正常和破坏TE发育的基因组基础和人IPSC衍生的类器官。核心将使用最先进的生物信息学，分析和整合所有这些基因组数据的计算和统计方法。这 Core提供严格的统计严格，支持湿板凳团队的生物信息学素养，提供数据管理，并促进项目之间的数据共享和更广泛的科学社区。