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AUTOMATED PROCEDURE FOR CONSTRUCTING AND SELECTING OPTIMIZED INITIAL MODELS

AUTOMATED PROCEDURE FOR CONSTRUCTING AND SELECTING OPTIMIZED INITIAL MODELS
构建和选择优化初始模型的自动化程序
批准号:
8362480
负责人:
BRIDGET Olivia CARRAGHER
金额:
$2.57万
依托单位国家:
美国
项目类别:
财政年份:
2011
资助国家:
美国
项目状态:
已结题
起止时间:
2011-05-01 至 2012-04-30

项目摘要

项目成果

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中文摘要
翻译
这个子项目是利用资源的许多研究子项目之一。 由NIH/NCRR资助的中心拨款提供。对子项目的主要支持 子项目的首席调查员可能是由其他来源提供的, 包括美国国立卫生研究院的其他来源。为子项目列出的总成本可能 表示该子项目使用的中心基础设施的估计数量, 不是由NCRR赠款提供给次级项目或次级项目工作人员的直接资金。 在单粒子电子显微镜(EM)中,电子密度图的重建 基本上取决于欧拉角的分配,这些欧拉角描述了 对应的2D投影图像。正确的分配将使正确的反投影成为可能 在3D空间中创建适当的体积,而不正确的分配 会产生不同程度的像差。因此,挑战在于找出真正的欧拉 所有投影的角度。这个问题可以通过直接倾斜样品来解决 在显微镜内或通过识别2D内的角度关系 图像本身(有关全面审查,请参见(Frank,2006a))。当2D图像 在EM网格上表示均相大分子络合物的至少几个视图 并且可以用定义良好的对比度传递函数(CTF)值来描述,它们包含所有 不需要额外的欧拉角分配的必要信息 宏观倾斜。根据中心截面定理,给出了二维傅里叶变换 投影图像表示通过3D傅里叶变换的切片(中心部分) 相应的对象。2D变换在傅里叶变换中又表示为径向线 空间,其中至少有一个必须由任何一对中央部分共享,而 它们的确切数量由物体的对称性唯一决定。正确识别(或 所有图像组合的公共线条的近似值)将允许 二维投影角关系的确定和欧拉的赋值 这将使随后的3D重建成为可能。
英文摘要
This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. Primary support for the subproject and the subproject's principal investigator may have been provided by other sources, including other NIH sources. The Total Cost listed for the subproject likely represents the estimated amount of Center infrastructure utilized by the subproject, not direct funding provided by the NCRR grant to the subproject or subproject staff. In single-particle electron microscopy (EM), the reconstruction of an electron density map depends fundamentally upon the assignment of Euler angles that describe the orientation of corresponding 2D projection images. A correct assignment will enable proper back-projection of the images in 3D space to create an appropriate volume, while an incorrect assignment will produce various degrees of aberrations. Thus, the challenge is identifying the true Euler angles for all projections. The problem can be solved either by directly tilting the specimen inside the microscope or through the identification of angular relationships within the 2D images themselves (for a comprehensive review, see (Frank, 2006a)). When the 2D images represent at least several views of homogeneous macromolecular complexes on the EM grid and can be described by well-defined contrast-transfer function (CTF) values, they contain all the necessary information for Euler angle assignment without requiring additional macroscopic tilting. According to the central section theorem, the 2D Fourier transform of a projection image represents a slice (central section) through the 3D Fourier transform of the corresponding object. The 2D transforms are in turn represented as radial lines in Fourier space, at least one of which will necessarily be shared by any pair of central sections, while their exact number is uniquely dictated by the object's symmetry. Proper identification (or approximation) of common lines for all combinations of images will allow for the determination of angular relationships between 2D projections and the assignment of Euler angles to each, which would enable subsequent 3D reconstruction.
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NCITU: National Center for In-situ Tomographic Ultramicroscopy. Supplement
  • 批准号:
    10579763
  • 项目类别:
  • 资助金额:
    $24.24万
  • 财政年份:
    2020
  • 负责人:
    BRIDGET Olivia CARRAGHER
  • 依托单位:
The National Center for In-situ Tomographic Ultramicroscopy (NCITU)
  • 批准号:
    10055409
  • 项目类别:
  • 资助金额:
    $170.0万
  • 财政年份:
    2020
  • 负责人:
    BRIDGET Olivia CARRAGHER
  • 依托单位:
The National Center for In-situ Tomographic Ultramicroscopy (NCITU)
  • 批准号:
    10397367
  • 项目类别:
  • 资助金额:
    $24.66万
  • 财政年份:
    2020
  • 负责人:
    BRIDGET Olivia CARRAGHER
  • 依托单位:
The National Center for In-situ Tomographic Ultramicroscopy (NCITU)
  • 批准号:
    10264061
  • 项目类别:
  • 资助金额:
    $170.0万
  • 财政年份:
    2020
  • 负责人:
    BRIDGET Olivia CARRAGHER
  • 依托单位:
海外基金