Mass Informatics of Two Dimensinoal Gas Chromatography Time-of-flight Mass Spectr

二维气相色谱飞行时间质谱的质量信息学

• 批准号: 8260467
• 负责人: Xiang Zhang
• 金额: $ 32.34万
• 依托单位: UNIVERSITY OF LOUISVILLE
• 依托单位国家: 美国
• 财政年份: 2009
• 资助国家: 美国
• 起止时间: 2009-05-01 至 2014-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8260467
• 关键词: Algorithms; Area; Biological; Biological Markers; Biomedical Research; Blood; Chromatography; Clinical; Collaborations; Communities; Complex; Complex Mixtures; Computational algorithm; Computer software; Data; Data Analyses; Data Files; Data Set; Detection; Development; Disease; Disease Marker; Emerging Technologies; Equilibrium; Gas Chromatography; Health; High temperature of physical object; Human; Informatics; Investigation; Liquid substance; Malignant Neoplasms; Malignant neoplasm of prostate; Marketing; Mass Fragmentography; Mass Spectrum Analysis; Measures; Medicine; Metabolic; Methods; Mission; Modeling; Modification; Molecular; Monitor; Multiple Myeloma; Noise; Online Systems; Output; Pathway Analysis; Patients; Pattern Recognition; Plasma; Preventive; Probability; Process; Public Health; Regulation; Relative (related person); Research Personnel; Residual state; Running; Sampling; Secure; Series; Signal Transduction; Simulate; Solutions; Source; Speed; Statistical Models; System; Technology; Temperature; Testing; Time; Urine; Variant; Visual; Work; base; clinically relevant; cohort; comparative; complex biological systems; data mining; direct application; graphical user interface; human data; improved; instrument; instrumentation; interest; liquid chromatography mass spectrometry; malignant breast neoplasm; metabolomics; open source; programs; small molecule; software systems; tool; two-dimensional; web services

DESCRIPTION (provided by applicant): High-throughput omics analysis platforms provide important new technical capabilities to analyze complex biological fluids for disease markers. A particularly important platform for metabolomics is two-dimensional gas chromatography time-of- flight mass spectrometry (GCxGC/TOF-MS) that provides both high precision and extended capacity for molecular detection. However, data analysis from this platform is not developed for high sample numbers or for detection of the very large numbers of analytes that this technology detects (more than 1500 per biofluid sample). We will develop an informatics platform for accurate and efficient analysis of data generated from GCxGC/TOF-MS analyses through the following specific aims: (1) Mass informatics for differential metabolomics, (2) Interactive visual analysis of metabolite correlation networks, and (3) Informatics analysis tools integration. The biological information that our system will deliver is regulation of altered metabolites that relate to phenotypic differences between groups of samples. This information will enable assessment of human health and wellness, and will have a direct impact on public health. In the context of existing collaborations, our initial large scale application focus will be analyses of metabolomic profiling data from plasma samples of patients with breast and prostate cancer compared with control subjects. Broadly speaking, our informatics tools will facilitate efforts in the metabolomics community to perform comparative metabolite profiling with high precision and high volume on the powerful GCXGC-TOF-MS platform. The project consists of the development of algorithms for assessment of metabolite identification accuracy, alignment of spectra, and normalization of datasets. Separate algorithms will be developed to distinguish specific molecules that are observed to be different between different sample cohorts and to provide a statistical significance context for each differentially expressed molecule. An additional group of algorithms will be developed to enable interactive visual analysis of metabolite correlation networks. Deliverables from this project will include provision of independent software modules that can be remotely invoked via web services and an integrated web-based data analysis pipeline for GCxGC/TOF-MS data.

描述（由申请人提供）：高通量组学分析平台提供了重要的新技术能力来分析复杂的生物液体中的疾病标志物。代谢组学的一个特别重要的平台是二维气相色谱飞行时间质谱 (GCxGC/TOF-MS)，它为分子检测提供高精度和扩展能力。然而，该平台的数据分析并不是针对大量样本或检测该技术检测到的大量分析物（每个生物流体样本超过 1500 个）而开发的。我们将开发一个信息学平台，通过以下具体目标准确有效地分析 GCxGC/TOF-MS 分析生成的数据：(1) 差异代谢组学的大量信息学，(2) 代谢物相关网络的交互式可视化分析，以及 (3) 信息学分析工具集成。我们的系统将提供的生物信息是对与样本组之间的表型差异相关的改变的代谢物的调节。这些信息将有助于评估人类健康和福祉，并对公共卫生产生直接影响。在现有合作的背景下，我们最初的大规模应用重点将是分析乳腺癌和前列腺癌患者血浆样本与对照受试者的代谢组学分析数据。从广义上讲，我们的信息学工具将促进代谢组学界在强大的 GCXGC-TOF-MS 平台上进行高精度和高容量的比较代谢物分析。该项目包括开发用于评估代谢物识别准确性、光谱对齐和数据集标准化的算法。将开发单独的算法来区分不同样本组之间观察到的不同的特定分子，并为每个差异表达的分子提供统计显着性背景。将开发另一组算法来实现代谢物相关网络的交互式视觉分析。该项目的交付成果将包括提供可通过 Web 服务远程调用的独立软件模块以及针对 GCxGC/TOF-MS 数据的基于 Web 的集成数据分析管道。

项目成果

Wavelet- and Fourier-transform-based spectrum similarity approaches to compound identification in gas chromatography/mass spectrometry.

• DOI: 10.1021/ac200740w
• 发表时间: 2011-07-15
• 期刊: ANALYTICAL CHEMISTRY
• 影响因子: 7.4
• 作者: Koo, Imhoi;Zhang, Xiang;Kim, Seongho
• 通讯作者: Kim, Seongho

A method of aligning peak lists generated by gas chromatography high-resolution mass spectrometry.

一种对齐气相色谱高分辨率质谱生成的峰列表的方法。

• DOI: 10.1039/c3an00667k
• 发表时间: 2013
• 期刊: The Analyst
• 作者: Wei,Xiaoli;Shi,Xue;Merrick,Mark;Willis,Peter;Alonso,David;Zhang,Xiang
• 通讯作者: Zhang,Xiang

Data dependent peak model based spectrum deconvolution for analysis of high resolution LC-MS data.

• DOI: 10.1021/ac403803a
• 发表时间: 2014-02-18
• 期刊: ANALYTICAL CHEMISTRY
• 影响因子: 7.4
• 作者: Wei, Xiaoli;Shi, Xue;Kim, Seongho;Patrick, Jeffrey S.;Binkley, Joe;Kong, Maiying;McClain, Craig;Zhang, Xiang
• 通讯作者: Zhang, Xiang

Electron Ionization-Induced Release of Coded Isotopic Reporter Ions in an m/z Zone of Minimal Interference for Quantifiable, Multiplexed GC-MS Analyses.

电子电离诱导在干扰最小的 m/z 区内释放编码同位素报告离子，以进行可定量的多重 GC-MS 分析。

• DOI: 10.1039/c3ay41124a
• 发表时间: 2013
• 期刊: Analytical methods : advancing methods and applications
• 作者: Laulhé,Sébastien;Geers,TylerE;Shi,Xue;Zhang,Xiang;Nantz,MichaelH
• 通讯作者: Nantz,MichaelH

Smith-Waterman peak alignment for comprehensive two-dimensional gas chromatography-mass spectrometry.

• DOI: 10.1186/1471-2105-12-235
• 发表时间: 2011-06-15
• 期刊: BMC bioinformatics
• 影响因子: 3
• 作者: Kim S;Koo I;Fang A;Zhang X
• 通讯作者: Zhang X