Low Temperature Solid-State NMR Technologies for Protein Structure Determination

用于蛋白质结构测定的低温固态核磁共振技术

• 批准号: 8710289
• 负责人: Chad M Rienstra
• 金额: $ 18.95万
• 依托单位: UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN
• 依托单位国家: 美国
• 财政年份: 2013
• 资助国家: 美国
• 起止时间: 2013-08-01 至 2016-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8710289
• 关键词: Address; Alcohols; Amplifiers; Amyloid Fibrils; Benchmarking; Caliber; Case Study; Chemicals; Communities; Consumption; Data; Data Collection; Data Set; Detection; Drug Formulations; Drug Targeting; Engineering; Freezing; Glycols; Hour; Label; Lipid Binding; Lipids; Magic; Measurement; Membrane; Membrane Proteins; Methods; NMR Spectroscopy; Neurodegenerative Disorders; Nuclear Magnetic Resonance; Parkinson Disease; Pattern; Peptides; Performance; Preparation; Procedures; Proteins; Protocols documentation; Protons; Reagent; Recycling; Relative (related person); Relaxation; Research; Research Project Grants; Resolution; Salts; Sampling; Site; Spectrum Analysis; Structure; Technology; Temperature; Tertiary Protein Structure; Testing; Time; alpha synuclein; aqueous; base; cold temperature; computerized data processing; experience; improved; methyl methanethiosulfonate; nanocrystal; novel strategies; protein complex; protein structure; prototype; public health relevance; solid state; solid state nuclear magnetic resonance; structural biology; synuclein; vector

DESCRIPTION (provided by applicant): In this project, new solid-state nuclear magnetic resonance (SSNMR) low temperature (~100 K) probe technology will be developed, along with sample preparation, data collection and data processing capabilities that most effectively leverage this capability for structural studies of membrane proteins and fibrils. These studies wil facilitate improved structural understanding of membrane proteins, which are the majority of current drug targets, and fibrils of proteins involved in Parkinson's disease and other neurodegenerative disorders. In recent years, SSNMR structural studies have advanced substantially and several research groups have been successful in determining protein structures, including not only nanocrystals but oligomeric membrane peptides, amyloid fibrils, and large membrane protein complexes. Such efforts rely critically upon the quality of the SSNMR data, including both sensitivity and resolution, which together determine the feasibility of structure determination and the final structural quality. Here the sensitivity and resolution of SSNMR spectra at low temperature will be evaluated and improved, specifically for membrane proteins and fibrils, by pursuit of three aims. Aim #1 is to complete the fabrication and installation of a 750 MHz cold magic-angle spinning probe, based on a 600 MHz prototype, including key features for sensitivity (3.2 mm rotor diameter; cold RF circuit; crossed coil resonator with low E field 1H resonator and 13C/15N solenoid), resolution (20 kHz MAS, <0.05 ppm B0 homogeneity, high power handling on 1H resonator), throughput (pneumatic sample insert and eject; <15 minute stabilization time upon sample change), and long-term operability (~2 L/hour N2(l) consumption, stable RF tuning performance for extended data collection periods). Aim #2 is to develop improved sample preparation protocols for enhancing spectral resolution and sensitivity at low temperature. Resolution will be enhanced by sparse isotopic labeling patterns and cryoprotection procedures utilizing organic alcohols, glycols and salts. Sensitivity will be improved by reducing T1 relaxation times with paramagnetic relaxation enhancement reagents, localized to the protein by covalent tags, as well as soluble aqueous and lipid-bound dopants. Aim #3 is to perform case studies of assignment and structure determination with a prototypical fourtransmembrane helix membrane protein (DsbB) and large, predominantly ¿-sheet fibril (¿-synuclein). These samples are well characterized near room temperature and thus present excellent benchmarks for evaluating the spectral resolution and sensitivity, as well as resultant structure quality, based on the new SSNMR probe technology.

描述（由申请人提供）：在本项目中，将开发新的固态核磁共振（SSNMR）低温（~100 K）探针技术，以及样品制备，数据收集和数据处理能力，最有效地利用这种能力进行膜蛋白和原纤维的结构研究。这些研究将有助于提高对膜蛋白结构的理解，膜蛋白是目前大多数药物靶点，以及与帕金森病和其他神经退行性疾病有关的蛋白原纤维。近年来，SSNMR结构研究取得了实质性进展，几个研究小组已经成功地确定了蛋白质结构，不仅包括纳米晶体，还包括低聚膜肽、淀粉样原纤维和大膜蛋白复合物。这些努力严重依赖于SSNMR数据的质量，包括灵敏度和分辨率，它们共同决定了结构确定的可行性和最终结构质量。这里的灵敏度和分辨率