A Latin American biobank for large-scale genetics research on severe mental illness

拉丁美洲生物库，用于严重精神疾病的大规模遗传学研究

• 批准号: 10363749
• 负责人: NELSON B. FREIMER
• 金额: $ 238.77万
• 依托单位: UNIVERSITY OF CALIFORNIA LOS ANGELES
• 依托单位国家: 美国
• 财政年份: 2020
• 资助国家: 美国
• 起止时间: 2020-05-01 至 2026-02-28
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10363749
• 关键词: Affect; Age; Alleles; Architecture; Area; Behavior; Bipolar Disorder; Categories; Collaborations; Colombia; Communities; Computerized Medical Record; Copy Number Polymorphism; DNA; Data; Data Set; Databases; Delusions; Diagnosis; Diagnostic; Disease; Ethnic Origin; Ethnic group; Etiology; European; Frequencies; Gender; Gene Frequency; Genes; Genetic; Genetic Research; Genetic study; Genotype; Geographic Locations; Goals; Grant; Home; Hospital Records; Hospitals; Individual; Interview; Investigation; Latin America; Latin American; Linkage Disequilibrium; Literature; Major Depressive Disorder; Maps; Medical; Mental Health; Meta-Analysis; Methods; Mining; Minor; Mood Disorders; Participant; Persons; Pharmaceutical Preparations; Phenotype; Population; Population Control; Predictive Value; Primary Health Care; Psychiatric Hospitals; Psychotic Disorders; Recording of previous events; Reduce health disparities; Research; Research Design; Resources; SNP array; SNP genotyping; Sampling; Sampling Studies; Schizophrenia; Structure; Suicide attempt; Symptoms; Testing; Transcend; United States; Variant; base; biobank; care providers; cohort; data repository; demographics; disease phenotype; disorder risk; exome sequencing; genetic analysis; genome wide association study; genome-wide; genomic locus; health disparity; improved; longitudinal analysis; loss of function; member; novel; phenome; phenotypic data; polygenic risk score; primary care services; psychiatric genomics; psychogenetics; rare variant; recruit; screening; severe mental illness; side effect; trait; treatment planning

PROJECT SUMMARY / ABSTRACT This proposed project will develop and make available to the scientific community the Latin American Biobank of Severe Mental Illness (LAB-SMI). This resource, a databank and biobank (including DNA samples and both phenotypic and genotypic data) for 50,000 individuals affected with SMI together with an equal number of controls matched to the cases by age, gender, and geographical location will constitute a major step in reversing the underrepresentation of Latin American populations in psychiatric genetics research. All of the participants will be members of the “Paisa”, a genetically and culturally homogenous population that is the predominant ethnic group in a region of Colombia (CO) that is home to ~9M people. Cases will consist of individuals affected with psychotic or mood disorders who will be ascertained, agnostic to diagnosis, through the electronic medical records (EMR) of five large psychiatric hospitals in the “Paisa region”. Controls will be individuals without a history of an SMI diagnosis who will be ascertained through the databases of SURA, one of the largest providers of primary care services in this region. By extracting a wide range of information from the EMR, using methods developed in an existing investigation of SMI in a single Paisa-region hospital, the project team will record lifetime designations of an SMI diagnosis and the presence or absence of SMI-related symptoms (such as delusions) and behaviors (such as suicide attempt). It is hypothesized that these phenotypic features may share genetic causation that transcends diagnostic categories. SNP genotyping and whole exome sequencing studies of the entire 100K LAB-SMI will be well powered to identify novel associations across the allele frequency spectrum for SMI diagnoses, symptoms, and behaviors, and to help identify the causal variation responsible for previously discovered associations. Additionally, the project will use the LAB-SMI databank to explore the architecture of SMI phenotypes. Specifically, it will investigate the genetic basis of different disease trajectories, and mine the full set of phenotype data for association with loci shown previously (through this project or others) to contribute to SMI diagnoses, symptoms, or behaviors.

项目总结/摘要 这一拟议项目将开发拉丁美洲生物库并向科学界提供 严重精神疾病（LAB-SMI）这种资源，一个数据库和生物库（包括DNA样本和两者） 表型和基因型数据），以及相同数量的 根据年龄、性别和地理位置与病例相匹配的对照将构成逆转 拉丁美洲人口在精神病遗传学研究中的代表性不足。所有参与者 将是“派萨”的成员，这是一个基因和文化上同质的人口，是主要的种族， 哥伦比亚（CO）地区的一个团体，该地区拥有约900万人口。案件将包括受影响的个人， 精神病或情绪障碍谁将被确定，不可知的诊断，通过电子医疗 在“派萨地区”五家大型精神病医院的电子病历中，对照组为无病史的个体 的SMI诊断谁将通过SURA的数据库，最大的供应商之一， 该地区的初级保健服务。通过从EMR中提取广泛的信息，使用方法 在一个Paisa地区医院的SMI现有调查中开发的，项目团队将记录生命周期 SMI诊断的名称以及是否存在SMI相关症状（如妄想） 行为（如自杀）。据推测，这些表型特征可能具有遗传相似性。 超越诊断类别的因果关系。SNP基因分型和全外显子组测序研究 整个100 K LAB-SMI将很好地识别等位基因频谱中的新关联， SMI诊断，症状和行为，并帮助确定因果变化负责以前 发现协会。此外，该项目将使用LAB-SMI数据库来探索 SMI表型。具体来说，它将调查不同疾病轨迹的遗传基础，并挖掘 与先前（通过本项目或其他项目）显示的基因座相关的全套表型数据有助于 SMI诊断、症状或行为。