Single nuclei RNA-seq to map adipose cellular populations and senescet cells in older subjects

单核 RNA-seq 绘制老年受试者的脂肪细胞群和衰老细胞图谱

• 批准号: 10361123
• 负责人: Nicolas Musi
• 金额: $ 63.24万
• 依托单位: UNIVERSITY OF TEXAS HLTH SCIENCE CENTER
• 依托单位国家: 美国
• 财政年份: 2022
• 资助国家: 美国
• 起止时间: 2022-06-15 至 2022-11-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10361123
• 关键词: Adipocytes; Adipose tissue; Adult; Affect; Age; Aging; Alzheimer' s Disease; Atherosclerosis; Atlases; Biology of Aging; Cell Aging; Cell Cycle Arrest; Cell Nucleus; Cell physiology; Cell surface; Cells; Dasatinib; Disease; Endothelial Cells; Etiology; Fatty acid glycerol esters; Functional disorder; Global Change; Health; Human; Immune; Individual; Inflammation; Intervention; Laboratories; Lead; Malignant Neoplasms; Maps; Mesenchymal Stem Cells; Metabolic; Metabolic Diseases; Metabolic dysfunction; Methodology; Methods; Molecular; Molecular Profiling; Non-Insulin-Dependent Diabetes Mellitus; Obesity; Outcome; Participant; Pharmaceutical Preparations; Phenotype; Play; Population; Property; Quercetin; Research; Resolution; Role; Small Nuclear RNA; Stromal Cells; Subgroup; Testing; Thinness; Tissues; Variant; base; bioinformatics tool; cohort; cytotoxicity; glucose tolerance; improved; innovation; insight; insulin sensitivity; lifestyle intervention; novel; novel strategies; obese person; preservation; response; senescence; single-cell RNA sequencing; stem; theories; tool; transcriptome; transcriptome sequencing

Aging is characterized by an expansion in adipose tissue (i.e. obesity), which plays a key role in the pathophysiology of many aging-diseases, including type 2 diabetes, atherosclerotic vascular disease, Alzheimer’s disease, and some cancers. Adipose tissue is composed of adipocytes, immune cells, endothelial cells, stem/stromal cells, and previously uncharacterized cellular populations. Adipose tissue also contains cells that have undergone cellular senescence, a state characterized by the arrest of the cell cycle and a senescence-associated secretory phenotype (SASP), which induces inflammation, cytotoxicity, and metabolic dysfunction in other cells and tissues. Recent research suggests that aging is associated with changes in adipose cellular populations and subpopulations, and that these variations may be involved in the biology of aging and etiology of aging-related diseases. Yet, the precise profiling of adipose tissue cellular composition has been limited due to a lack of robust cell surface markers for the numerous cellular subpopulations. Single-cell (sc) RNA seq is a novel high-resolution methodology that enables global identification of cellular populations and subpopulations (known and newly identified) in tissues. We have developed a single nuclei (sn)RNA-seq based method (a variation of scRNA-seq) that allows excellent identification, separation and clustering of adipose cellular populations, including mature adipocytes, immune cells, endothelial cells, and mesenchymal stem cells. Although snRNA-seq also is a promising tool for identification and characterization of cells undergoing senescence, it has not been used to more fully elucidate the importance of such cells in the biology of aging and the etiology of aging-related metabolic diseases. In Aim 1 we will conduct adipose tissue molecular profiling via snRNA-seq in three cohorts at baseline: younger lean, older lean, and older obese individuals. We will develop molecular atlases in these subjects to test the hypothesis that both aging and aging plus obesity will have distinct adipose tissue molecular profiles. In a subgroup of older obese subjects we will also test whether a lifestyle intervention changes the global molecular profile in adipose tissue to a profile closer to that in younger and older lean individuals. In Aim 2 we will focus on the identification, quantification, and functional characterization of adipose tissue senescent cells. Sub Aim 2A will test the hypotheses that the amount and function (i.e. SASP) of adipose tissue senescent cells will be elevated with aging and further enhanced by obesity, and that the lifestyle intervention (from Aim 1) will reduce senescent cell burden in older obese subjects. In Sub Aim 2B we will administer senolytic agents to a subgroup of older obese subjects (from Aim 1) to determine whether clearance of senescent cells improves metabolic outcomes. This Sub Aim will directly test the cellular senescence theory and will serve as a positive control for the lifestyle intervention regarding its potential anti-senescence effect.

衰老的特征在于脂肪组织的扩张（即肥胖），其在衰老的过程中起关键作用。 许多衰老疾病的病理生理学，包括2型糖尿病，动脉粥样硬化性血管疾病， 老年痴呆症和一些癌症。脂肪组织是由脂肪细胞、免疫细胞、内皮细胞、 细胞、干/基质细胞和以前未表征的细胞群。脂肪组织还含有 已经经历细胞衰老的细胞，细胞衰老是一种以细胞周期停滞为特征的状态， 衰老相关分泌表型（SASP），其诱导炎症、细胞毒性和代谢 其他细胞和组织的功能障碍。最近的研究表明，衰老与 脂肪细胞群和亚群，这些变化可能涉及的生物学 衰老和衰老相关疾病的病因学。然而，脂肪组织细胞成分的精确分析 由于缺乏许多细胞亚群的稳健细胞表面标记物， 单细胞（sc）RNA seq是一种新的高分辨率方法，能够在全球范围内识别细胞 群体和亚群（已知和新鉴定）。我们已经发展出一个单一的原子核 （sn）基于RNA-seq的方法（scRNA-seq的变体），其允许优异的鉴定、分离和鉴定。 脂肪细胞群的聚集，包括成熟脂肪细胞、免疫细胞、内皮细胞，以及 间充质干细胞虽然snRNA-seq也是一种有前途的工具，用于鉴定和表征 尽管这些细胞经历衰老，但它尚未被用于更充分地阐明这些细胞在衰老过程中的重要性。 衰老生物学和衰老相关代谢疾病的病因学。 在目标1中，我们将在基线时在三个队列中通过snRNA-seq进行脂肪组织分子谱分析： 年轻瘦型、老年瘦型和老年肥胖型个体。我们将开发这些学科的分子图谱， 检验衰老和衰老加肥胖将具有不同的脂肪组织分子谱的假设。 在老年肥胖受试者的一个亚组中，我们还将测试生活方式干预是否会改变整体肥胖水平。 脂肪组织中的分子谱更接近于年轻和老年瘦个体中的分子谱。 在目标2中，我们将重点关注脂肪组织的识别、定量和功能特征 衰老细胞子目标2A将检验以下假设： 组织衰老细胞将随着年龄的增长而增加，肥胖会进一步增强， 干预（来自目标1）将减少老年肥胖受试者的衰老细胞负担。在子目标2B中，我们将 向老年肥胖受试者亚组（来自目标1）给予衰老清除剂，以确定是否清除 可以改善代谢结果。这一子目标将直接检验细胞衰老理论 并将作为生活方式干预潜在抗衰老作用的阳性对照。