Mechanisms and Evolution of Host Tolerance to Transposable Elements

宿主对转座因子的耐受性机制和进化

• 批准号: 10798551
• 负责人: Erin S Kelleher
• 金额: $ 2.3万
• 依托单位: UNIVERSITY OF HOUSTON
• 依托单位国家: 美国
• 财政年份: 2020
• 资助国家: 美国
• 起止时间: 2020-07-01 至 2025-04-30
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10798551
• 关键词: Alleles; Cells; Cellular Stress; Collection; Complex; DNA; DNA Damage; DNA Sequence; DNA Transposable Elements; DNA Transposons; Development; Dose; Drosophila melanogaster; Elements; Evolution; Excision; Female; Future; Gametogenesis; Genome; Genomics; Genotoxic Stress; Goals; Heterochromatin; Human Genome; Invaded; Malignant Neoplasms; Maps; Modeling; Mutation; Nuclear; Oogenesis; Parasites; Population; Quantitative Trait Loci; Recording of previous events; Repression; Research; Resistance; Shapes; Shock; Small RNA; Taxonomy; Tremor; Variant; age related neurodegeneration; cost; experimental study; fitness; genetic analysis; genetic variant; genotoxicity; innovation; mutant; resistance mechanism; response; transposon/insertion element; tumor

PROJECT SUMMARY/ABSTRACT Transposable elements (TEs) are omnipresent genomic parasites, comprising >70% of the nuclear DNA in certain lineages. In addition to producing deleterious mutations, TEs can exert lethal, genotoxic effects on host cells by causing double-stranded breaks during insertion and excision. Host genomes have two mechanisms for avoiding the fitness costs of parasitic TEs: resistance and tolerance. Mechanisms of resistance reduce TE load by repressing transposition, while mechanisms of tolerance reduce the fitness consequences of existing TEs. While resistance to TEs is studied extensively, with small-RNAs in particular emerging as a taxonomically widespread strategy, tolerance is a new concept that I have recently proposed. Furthermore, through an innovative QTL mapping experiment, I provided critical proof-of-principle for tolerant genetic variants in Drosophila melanogaster. In the future, I propose to build on these recent discoveries to expand our understanding of tolerance mechanisms and evolution. First, we will study the mechanism and recent evolutionary history of bruno-dependent tolerance to P- element DNA transposons. Bruno is a developmental regulator of oogenesis, which we have recently demonstrated is a major determinant of female germline tolerance to unregulated P-element transposition. By combining genetic analysis of mutant alleles, as well tolerant bruno variants we have isolated from natural populations, we will reveal the underlying mechanism of bruno-dependent tolerance. Furthermore, by taking advantage of the unique opportunity provided by historic D. melanogaster collections, we will evaluate the contribution of bruno tolerant variants to the host adaptation to the P-element invasion in the mid 20th century. My second research direction is motivated by our discovery that natural variation in heterochromatin is an important determinant of how cells are impacted by unregulated transposition: larger doses of heterochromatin and reduced heterochromatin formation decrease cellular tolerance. These observations are reminiscent of Barbara McClintock's “genomic shock” model, in which tremors arising from DNA damage or cellular stress trigger the release normally quiescent repeats. I therefore propose to interrogate the relationship between heterochromatic variation and response to genotoxic stress at both the cellular and regulatory levels. My long-term goal is to reveal complex and intimate relationships between TEs and their hosts, which contribute to genome evolution and shape the evolution of gametogenesis. A better understanding of these interactions is of vital importance because: 1) they are the interface at which TEs and host cells coevolve, 2) TE activity is implicated in the onset, progression of many tumor types and age related neurodegenerative diseases, and 3) vast differences in TE content and distribution between host genomes remain largely unexplained.

项目摘要/摘要 转座元件(TES)是无处不在的基因组寄生虫，占核的70%。 某些血统的DNA。除了产生有害的突变外，TES还会产生致命的遗传毒性效应 通过在插入和切除过程中引起双链断裂而对宿主细胞产生影响。宿主基因组有两个 避免寄生虫TES适应成本的机制：抗性和耐受性。机制： 抗性通过抑制转位减少TE负荷，而耐受机制降低适应度 现有工商业污水附加费的后果。而对TES的抗性则被广泛研究，特别是小RNA 宽容是我最近提出的一个新概念，它是一种分类上广泛存在的战略。 此外，通过一个创新的QTL定位实验，我为耐性提供了关键的原理证明 黑腹果蝇的遗传变异。在未来，我建议在这些最新发现的基础上 扩大我们对耐受机制和进化的理解。 首先，我们将研究布鲁诺依赖耐受性的机制和最近的进化史。 元素DNA转座子。布鲁诺是卵子发生的发育调节器，我们最近研究了 已证实是雌性生殖系对非调控P元素转位耐受性的主要决定因素。通过 结合突变等位基因的遗传分析，以及我们从天然中分离出的耐受的Bruno变体 我们将揭示布鲁诺依赖耐受的潜在机制。此外，通过采取 利用历史上的黑腹毛虫收藏所提供的独特机会，我们将评估 布鲁诺耐受变异体在20世纪中叶宿主适应P元素入侵中的贡献。 我的第二个研究方向是我们发现异染色质的自然变异是 细胞如何受到非调控转座影响的一个重要决定因素：更大剂量的 异染色质和异染色质形成减少会降低细胞耐受性。这些观察结果是 这让人想起芭芭拉·麦克林托克的“基因组休克”模型，在这个模型中，DNA损伤或 细胞压力触发释放，通常是静止的重复。因此，我提议审问两国关系 在细胞水平和调控水平上，异色变异和对遗传毒性胁迫的反应之间的关系。 我的长期目标是揭示TES和它们的东道主之间复杂而亲密的关系，这 有助于基因组进化和塑造配子发生的进化。更好地理解这些 相互作用至关重要，因为：1)它们是TES和宿主细胞共同进化的界面，2) TE活性与多种肿瘤类型和年龄相关神经退行性变的发生、发展有关 疾病，以及3)寄主基因组之间TE含量和分布的巨大差异 无法解释。

项目成果

Protein-Protein Interactions Shape Genomic Autoimmunity in the Adaptively Evolving Rhino-Deadlock-Cutoff Complex.

• DOI: 10.1093/gbe/evab132
• 发表时间: 2021-07-06
• 期刊: Genome biology and evolution
• 影响因子: 3.3
• 作者: Kelleher ES

Genetic variation in P-element dysgenic sterility is associated with double-strand break repair and alternative splicing of TE transcripts.

• DOI: 10.1371/journal.pgen.1010080
• 发表时间: 2022-12
• 期刊: PLoS genetics
• 影响因子: 4.5

P-element invasion fuels molecular adaptation in laboratory populations of Drosophila melanogaster.

P 元素入侵促进了实验室黑腹果蝇种群的分子适应。

• DOI: 10.1093/evolut/qpad017
• 发表时间: 2023
• 期刊: Evolution; international journal of organic evolution
• 作者: Wang,Luyang;Zhang,Shuo;Hadjipanteli,Savana;Saiz,Lorissa;Nguyen,Lisa;Silva,Efren;Kelleher,Erin
• 通讯作者: Kelleher,Erin