Female Reproductive Tissue Mapping Center
女性生殖组织测绘中心
基本信息
- 批准号:10119154
- 负责人:
- 金额:$ 60万
- 依托单位:
- 依托单位国家:美国
- 项目类别:
- 财政年份:2020
- 资助国家:美国
- 起止时间:2020-09-25 至 2022-08-31
- 项目状态:已结题
- 来源:
- 关键词:3-DimensionalATAC-seqAdoptionAntibodiesArchitectureAtlasesBenignBiologyBiomechanicsCell CommunicationCell ProliferationCellsClinicalClinical DataClinical ResearchCollaborationsCollectionCommunicationCommunitiesComputational BiologyCytometryDataData AnalysesData SetDiscipline of obstetricsDiseaseDistantEndometrialEndometriumEndothelial CellsEndotheliumEnsureEvaluationExtracellular MatrixFemaleFemale infertilityFreezingFunctional disorderFutureGenerationsGoalsGrowthGynecologic PathologyGynecologic Surgical ProceduresGynecologyHistologicHistologyHuman BioMolecular Atlas ProgramHuman ResourcesImageIn SituInflammationInfrastructureKidneyLeadLifeLongevityLuteal PhaseLymphatic SystemMagnetic Resonance ImagingMalignant Female Reproductive System NeoplasmMammalian OviductsMapsMenopauseMenstrual cycleMenstruationMetadataMicroscopicModalityMolecularMolecular ProfilingMyometrialNormal RangeNormal tissue morphologyNucleic AcidsNursing FacultyOperative Surgical ProceduresOrganOutcomeOvaryPathologyPerfusionPerinatalPeriodicityPhysiologicalPlacentaPlacenta AccretaPopulationPostmenopausePre-EclampsiaPregnancyPregnancy OutcomePregnant WomenPremenopauseProcessPropertyProteomicsPubertyPublic HealthQuality ControlRadiology SpecialtyResearchResearch InfrastructureResearch PersonnelResolutionResource SharingResourcesSamplingSignal TransductionStructureTechnologyTestingTissuesTranslational ResearchUltrasonographyUterusVisualizationWomancalcificationcell typecohortcollaboratorydata harmonizationdata managementdata sharingendometriosisexperiencefemale reproductive systemhuman datahuman femalein vivoin vivo imaginginteroperabilitymimicrymultiple omicsmultiscale datanew technologynovelpathology imagingpregnantpreservationprogramsrecruitreproductivereproductive organsingle-cell RNA sequencingtargeted treatmenttechnology developmenttherapy developmenttooltranscriptomicstrophoblast
项目摘要
SUMMARY
The placenta, uterus, ovary, and fallopian tube act in concert to achieve successful pregnancy outcomes.
These organs undergo marked changes in structure and function throughout the lifespan, coordinating with
one another via direct and distant cell-cell interactions. Here, we propose to generate and integrate data from
in vivo imaging and ex vivo histopathologic, biomechanical, and multi-omic spatial profiling data, in order to
generate reference multiscale 3D maps of healthy human female reproductive organs representing a range of
normal physiologic states that exist at different points in a woman’s life. These will serve as key frames of
reference for future studies aiming to discover how perturbation of tissue structure and function leads to organ
dysfunction and disease. Our team is well-equipped to achieve this goal, with expertise in clinical Obstetrics &
Gynecology and Placental/Perinatal and Gynecologic Pathology, imaging, spatial molecular profiling, single-
cell omics, extracellular matrix (ECM) biology, biomechanical testing, data management, and computational
biology. We will leverage our well-established translational research infrastructure to recruit diverse cohorts of
healthy pregnant women and non-pregnant premenopausal and postmenopausal women undergoing
gynecologic surgery for benign indications. We will then perform in vivo imaging using MRI and ultrasound to
delineate tissue structure, perfusion, inflammation, calcifications, and other features. After delivery/surgery,
tissues will be rapidly sampled, processed, and stored in multiple ways (fresh, flash frozen, preserved in
solutions for optimal nucleic acid analysis, and FFPE) to enable generation of high-quality data using a variety
of molecular approaches, with extra samples retained for future studies. Detailed review of clinical data and
formal histopathologic evaluation of adjacent tissue sections will be performed to confirm that normal tissue
has been obtained from subjects with normal outcomes. Initial ex vivo analysis will include biomechanical
testing, extracellular matrix proteomics, and bulk and single-cell RNAseq and ATACseq. The results of these
studies will be analyzed to identify targets for the subsequent imaging mass cytometry (IMC) and spatial
transcriptomic studies. These data types will be integrated to enable mapping of the relationships among
different cell types and between cells and the surrounding extracellular matrix on the microscopic level, and
between tissue architecture and the biomechanical properties and imaging features on a macroscopic level.
The unique populations of endothelial cells in the placenta and the endothelial mimicry of the extravillous
trophoblast will provide unique opportunities to integrate with other endothelial-centric HuBMAP projects (e.g.
lymphatic system, endothelial atlas, and kidney atlas). Close interactions with other HuBMAP Centers will be
established to enable harmonization of data and metadata standards, sharing of resources (e.g. antibodies
with HuBMAP Centers that are developing/using CODEX and MIBI-TOF), rapid adoption of new technologies,
collaborative data analysis, and rapid sharing of data with the HIVE and the broader scientific community.
总结
项目成果
期刊论文数量(0)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
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LOUISE CHANG LAURENT其他文献
LOUISE CHANG LAURENT的其他文献
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{{ truncateString('LOUISE CHANG LAURENT', 18)}}的其他基金
2023 RNA Nanotechnology Gordon Research Conference and Seminar
2023年RNA纳米技术戈登研究会议暨研讨会
- 批准号:
10598881 - 财政年份:2023
- 资助金额:
$ 60万 - 项目类别:
Administrative Supplement to U54 HD110347: Development of a Common Processing Pipeline and Visualization Tools for HuBMAP GeoMx Assays
U54 HD110347 的行政补充:用于 HuBMAP GeoMx 检测的通用处理流程和可视化工具的开发
- 批准号:
10825269 - 财政年份:2022
- 资助金额:
$ 60万 - 项目类别:
CO-CREATE-Ex: Community-engaged Optimization of COVID-19 Rapid Evaluation And TEsting Experiences
CO-CREATE-Ex:社区参与优化 COVID-19 快速评估和测试体验
- 批准号:
10617124 - 财政年份:2022
- 资助金额:
$ 60万 - 项目类别:
Bridging dataset generation to enable integrated data analysis and interpretation across HuBMAP tissues
桥接数据集生成以实现跨 HuBMAP 组织的集成数据分析和解释
- 批准号:
10672692 - 财政年份:2022
- 资助金额:
$ 60万 - 项目类别:
CO-CREATE-Ex: Community-engaged Optimization of COVID-19 Rapid Evaluation And TEsting Experiences
CO-CREATE-Ex:社区参与优化 COVID-19 快速评估和测试体验
- 批准号:
10845417 - 财政年份:2022
- 资助金额:
$ 60万 - 项目类别:
Female Reproductive Tissue Mapping Center Coordination Core
女性生殖组织绘图中心协调核心
- 批准号:
10268240 - 财政年份:2020
- 资助金额:
$ 60万 - 项目类别:
Female Reproductive Tissue Mapping Center Coordination Core
女性生殖组织绘图中心协调核心
- 批准号:
10119155 - 财政年份:2020
- 资助金额:
$ 60万 - 项目类别:
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